Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFLLDEDM_13 | 53420 | 54124 | WalR | 5.38e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HFLLDEDM_121 | 86520 | 86326 | CspR | 5.36e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HFLLDEDM_121 | 86520 | 86323 | CspA | 8.22e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HFLLDEDM_1 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_2 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_3 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_4 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_5 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_6 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_7 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_8 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_9 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_10 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_12 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_13 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_14 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_15 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_16 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_24 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_35 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_46 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_57 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_62 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_63 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_64 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_65 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_66 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_67 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_68 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_69 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_70 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_71 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_72 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_73 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_74 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_75 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_76 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_77 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_78 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_79 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_80 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_81 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_82 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_83 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_84 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_85 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_86 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_87 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_88 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_89 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_90 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_91 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_92 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_93 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_94 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_95 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_96 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_97 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_98 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_99 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_100 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_101 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_102 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_103 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_104 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_105 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_106 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_107 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_108 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_109 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_110 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_111 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_112 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_113 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_114 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_115 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_116 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_117 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_118 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_119 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_120 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_121 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_122 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_123 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_124 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_125 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_126 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_128 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_129 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_130 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_131 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_132 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_133 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_134 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_135 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_136 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_137 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_138 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_139 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_140 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_141 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_142 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_143 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_144 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_145 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_146 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_147 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_148 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_149 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_150 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_151 | 1.0 | 0.0 | 1.0 |
| HFLLDEDM_152 | 0.0 | 1.0 | 0.0 |
| HFLLDEDM_153 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HFLLDEDM_69 | 33609 | 47775 | False | Siphoviridae | VOG0804, VOG9640, VOG4856, VOG4619, VOG4619, VOG0801, VOG6307, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696 |
| HFLLDEDM_83 | 2775 | 23947 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886 |
| HFLLDEDM_132 | 92742 | 103852 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)