Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 1 | 0 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCLNPNNB_105 | 334906 | 336831 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| FCLNPNNB_97 | 34099 | 35001 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FCLNPNNB_97 | 34099 | 35001 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| FCLNPNNB_90 | 2456 | 3258 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.63 | 100.00 | M17808 |
| FCLNPNNB_105 | 334906 | 336831 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
| FCLNPNNB_148 | 111942 | 112892 | cfxA4 | Unknown Beta-lactam | 86.12 | 98.34 | AY769933 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCLNPNNB_97 | 34102 | 35001 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| FCLNPNNB_90 | 2692 | 3258 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 99.47 | 71.05 | WP_002682030.1 |
| FCLNPNNB_105 | 334909 | 336831 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
| FCLNPNNB_148 | 111941 | 112894 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 83.65 | 99.07 | WP_057280848.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FCLNPNNB_126 | 4570 | 5763 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 100.00 | 100.00 | BAA77275 |
| FCLNPNNB_126 | 4570 | 5763 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 96.90 | 100.00 | BAA77277 |
| FCLNPNNB_126 | 4570 | 5763 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.47 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FCLNPNNB_151 | 937 | 1616 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCLNPNNB_1 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_2 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_3 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_4 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_5 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_11 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_22 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_32 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_41 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_51 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_59 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_68 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_77 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_81 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_82 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_83 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_84 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_85 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_86 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_87 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_88 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_89 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_90 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_91 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_92 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_93 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_94 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_95 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_96 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_97 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_98 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_99 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_100 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_101 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_102 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_103 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_104 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_105 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_106 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_107 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_108 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_109 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_110 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_111 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_112 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_113 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_114 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_115 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_116 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_117 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_118 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_119 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_120 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_121 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_122 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_123 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_124 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_125 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_126 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_127 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_128 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_129 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_130 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_131 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_133 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_134 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_135 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_136 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_137 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_138 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_139 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_140 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_141 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_142 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_143 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_144 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_145 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_146 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_147 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_148 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_149 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_150 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_151 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_152 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_153 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_154 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_155 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_156 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_157 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_158 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_159 | 0.0 | 1.0 | 0.0 |
| FCLNPNNB_160 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_161 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_162 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_163 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_164 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_165 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_166 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_167 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_168 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_169 | 1.0 | 0.0 | 1.0 |
| FCLNPNNB_170 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCLNPNNB_86 | 12677 | 20715 | False | Siphoviridae | VOG7238, |
| FCLNPNNB_96 | 19424 | 24907 | False | Myoviridae | VOG5225, |
Phigaro v2.4.0 (Database: Jan. 2024 release)