Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKJHMDJL_77 | 114975 | 116900 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| CKJHMDJL_121 | 20691 | 21593 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CKJHMDJL_121 | 20691 | 21593 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| CKJHMDJL_113 | 2458 | 3262 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
| CKJHMDJL_77 | 114975 | 116900 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
| CKJHMDJL_22 | 93634 | 94584 | cfxA4 | Unknown Beta-lactam | 86.12 | 98.34 | AY769933 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKJHMDJL_121 | 20691 | 21590 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| CKJHMDJL_77 | 114978 | 116900 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
| CKJHMDJL_22 | 93632 | 94585 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 83.65 | 99.07 | WP_057280848.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CKJHMDJL_159 | 4570 | 5763 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 100.00 | 100.00 | BAA77275 |
| CKJHMDJL_159 | 4570 | 5763 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 96.90 | 100.00 | BAA77277 |
| CKJHMDJL_159 | 4570 | 5763 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.47 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKJHMDJL_1 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_2 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_3 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_4 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_5 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_6 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_7 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_8 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_9 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_10 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_11 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_14 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_15 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_16 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_17 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_18 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_19 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_20 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_22 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_33 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_44 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_55 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_66 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_77 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_88 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_98 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_105 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_106 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_107 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_108 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_109 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_110 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_111 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_112 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_113 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_114 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_115 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_116 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_117 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_118 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_119 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_120 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_121 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_122 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_123 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_124 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_125 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_126 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_127 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_128 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_129 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_130 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_131 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_132 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_133 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_134 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_135 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_136 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_137 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_138 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_139 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_140 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_141 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_142 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_143 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_144 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_145 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_146 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_147 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_148 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_149 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_150 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_151 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_152 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_153 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_154 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_155 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_156 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_157 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_158 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_159 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_160 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_161 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_162 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_163 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_164 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_166 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_167 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_168 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_169 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_170 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_171 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_172 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_173 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_174 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_175 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_176 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_177 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_178 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_179 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_180 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_181 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_182 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_183 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_184 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_185 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_186 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_187 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_188 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_189 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_190 | 0.0 | 1.0 | 0.0 |
| CKJHMDJL_191 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_192 | 1.0 | 0.0 | 1.0 |
| CKJHMDJL_193 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKJHMDJL_140 | 12677 | 20715 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)