Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGKFHEMI_18 | 140175 | 141380 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| HGKFHEMI_75 | 3846 | 4640 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
| HGKFHEMI_75 | 1952 | 2494 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| HGKFHEMI_75 | 1047 | 1955 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HGKFHEMI_75 | 1047 | 1955 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| HGKFHEMI_75 | 3846 | 4640 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| HGKFHEMI_96 | 89 | 1306 | mef(A) | Erythromycin, Azithromycin | 95.16 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGKFHEMI_75 | 1047 | 1952 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| HGKFHEMI_75 | 3846 | 4637 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| HGKFHEMI_18 | 141405 | 141914 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HGKFHEMI_75 | 1952 | 2491 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| HGKFHEMI_18 | 140175 | 141377 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| HGKFHEMI_96 | 89 | 1303 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGKFHEMI_2 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_5 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_6 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_8 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_10 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_12 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_13 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_15 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_16 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_17 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_18 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_20 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_21 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_23 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_24 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_26 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_29 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_31 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_32 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_34 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_36 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_37 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_38 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_39 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_40 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_41 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_43 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_44 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_45 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_46 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_48 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_49 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_50 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_52 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_55 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_57 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_58 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_60 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_62 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_63 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_64 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_65 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_66 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_67 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_68 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_69 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_70 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_71 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_72 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_74 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_75 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_76 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_77 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_78 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_79 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_80 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_81 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_82 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_83 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_84 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_85 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_86 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_88 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_89 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_90 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_91 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_93 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_94 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_95 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_96 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_97 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_98 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_99 | 1.0 | 0.0 | 1.0 |
| HGKFHEMI_100 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_101 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_102 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_103 | 0.0 | 1.0 | 0.0 |
| HGKFHEMI_106 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGKFHEMI_40 | 40169 | 42161 | False | Unknown | VOG0572 |
Phigaro v2.4.0 (Database: Jan. 2024 release)