Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MFGPMABF_29 | 120612 | 122586 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MFGPMABF_29 | 120612 | 122537 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| MFGPMABF_44 | 234408 | 235358 | cfxA4 | Unknown Beta-lactam | 86.12 | 98.34 | AY769933 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MFGPMABF_29 | 120615 | 122537 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| MFGPMABF_44 | 234406 | 235359 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 83.65 | 99.07 | WP_057280848.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MFGPMABF_13 | 108863 | 107283 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MFGPMABF_1 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_2 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_3 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_4 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_6 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_8 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_10 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_12 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_13 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_14 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_15 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_17 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_18 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_21 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_22 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_23 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_24 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_25 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_26 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_27 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_28 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_29 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_30 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_31 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_33 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_34 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_35 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_38 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_40 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_41 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_42 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_43 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_44 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_45 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_46 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_47 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_48 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_49 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_50 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_53 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_54 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_56 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_57 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_58 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_59 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_60 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_61 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_63 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_64 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_65 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_66 | 1.0 | 0.0 | 1.0 |
| MFGPMABF_67 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_71 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_73 | 0.0 | 1.0 | 0.0 |
| MFGPMABF_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)