Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMHNHDMD_1 | 72897 | 74822 | tet(Q) | ARO:3000191 | tet(Q) | 98.44 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMHNHDMD_1 | 72897 | 74822 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 100.00 | Z21523 |
| OMHNHDMD_2 | 71934 | 72708 | cepA-49 | Unknown Beta-lactam | 80.15 | 85.16 | U05886 |
| OMHNHDMD_2 | 71934 | 72708 | cepA | Unknown Beta-lactam | 80.15 | 85.16 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMHNHDMD_1 | 72900 | 74822 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.44 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OMHNHDMD_39 | 472 | 1052 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMHNHDMD_1 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_2 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_3 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_4 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_5 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_6 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_7 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_8 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_9 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_10 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_11 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_12 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_13 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_14 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_15 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_16 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_17 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_18 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_19 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_20 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_21 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_22 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_23 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_24 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_25 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_29 | 1.0 | 0.0 | 1.0 |
| OMHNHDMD_30 | 1.0 | 0.0 | 1.0 |
| OMHNHDMD_31 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_32 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_33 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_35 | 1.0 | 0.0 | 1.0 |
| OMHNHDMD_36 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_37 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_38 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_39 | 1.0 | 0.0 | 1.0 |
| OMHNHDMD_40 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_41 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_43 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_54 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_64 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_66 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_67 | 0.0 | 1.0 | 0.0 |
| OMHNHDMD_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMHNHDMD_12 | 50331 | 62556 | False | Unknown | VOG5096, |
Phigaro v2.4.0 (Database: Jan. 2024 release)