Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJMFAHEL_2 | 34352 | 37915 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJMFAHEL_2 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_3 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_4 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_5 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_6 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_7 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_8 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_9 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_10 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_11 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_12 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_13 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_14 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_15 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_16 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_17 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_18 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_19 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_20 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_21 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_22 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_23 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_24 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_25 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_26 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_27 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_28 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_29 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_30 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_32 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_33 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_34 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_35 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_36 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_37 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_38 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_39 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_40 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_41 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_42 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_43 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_44 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_45 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_46 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_47 | 1.0 | 0.0 | 1.0 |
| PJMFAHEL_53 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_57 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_62 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_63 | 0.0 | 1.0 | 0.0 |
| PJMFAHEL_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJMFAHEL_14 | 6408 | 14122 | False | Unknown | VOG7642, VOG7641, VOG0585, VOG0275, VOG4910 |
Phigaro v2.4.0 (Database: Jan. 2024 release)