Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHBCPBLA_78 | 168499 | 169389 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| JHBCPBLA_24 | 34385 | 36358 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| JHBCPBLA_79 | 3165 | 3965 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| JHBCPBLA_79 | 1816 | 2952 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHBCPBLA_79 | 3165 | 3965 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| JHBCPBLA_24 | 34385 | 36310 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JHBCPBLA_79 | 1786 | 2952 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| JHBCPBLA_10 | 67162 | 68112 | cfxA3 | Ampicillin | 85.91 | 98.34 | AF472622 |
| JHBCPBLA_10 | 67162 | 68112 | cfxA4 | Unknown Beta-lactam | 85.91 | 98.34 | AY769933 |
| JHBCPBLA_10 | 67162 | 68112 | cfxA5 | Unknown Beta-lactam | 85.91 | 98.34 | AY769934 |
| JHBCPBLA_10 | 67162 | 68112 | cfxA | Cefoxitin, Ampicillin | 85.91 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHBCPBLA_79 | 3168 | 3965 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| JHBCPBLA_24 | 34388 | 36310 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JHBCPBLA_79 | 1786 | 2949 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
| JHBCPBLA_78 | 168499 | 169386 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| JHBCPBLA_10 | 67161 | 68114 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.33 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHBCPBLA_1 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_2 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_3 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_4 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_5 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_6 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_7 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_8 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_9 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_10 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_11 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_12 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_13 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_14 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_15 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_16 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_17 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_18 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_19 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_20 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_21 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_22 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_23 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_24 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_25 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_26 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_27 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_28 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_29 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_30 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_31 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_32 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_33 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_34 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_35 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_36 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_37 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_38 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_39 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_40 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_41 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_42 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_43 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_44 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_45 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_46 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_47 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_48 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_49 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_50 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_51 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_52 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_54 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_55 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_56 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_58 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_59 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_60 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_61 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_62 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_63 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_64 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_65 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_66 | 1.0 | 0.0 | 1.0 |
| JHBCPBLA_75 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_78 | 0.0 | 1.0 | 0.0 |
| JHBCPBLA_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHBCPBLA_54 | 68638 | 80629 | False | Unknown | VOG4568, |
Phigaro v2.4.0 (Database: Jan. 2024 release)