Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCFFBKCJ_72 | 7074 | 8999 | tet(Q) | ARO:3000191 | tet(Q) | 97.19 | 97.56 | Z21523.1 |
| LCFFBKCJ_88 | 2426 | 3631 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LCFFBKCJ_112 | 1016 | 1753 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCFFBKCJ_112 | 1016 | 1753 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| LCFFBKCJ_72 | 7074 | 8999 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.73 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCFFBKCJ_88 | 1892 | 2401 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LCFFBKCJ_88 | 2429 | 3631 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LCFFBKCJ_112 | 1016 | 1750 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| LCFFBKCJ_72 | 7077 | 8999 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCFFBKCJ_1 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_2 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_3 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_4 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_5 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_8 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_15 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_23 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_28 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_34 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_40 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_43 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_45 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_46 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_47 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_48 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_49 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_50 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_51 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_52 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_53 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_54 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_55 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_56 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_57 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_58 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_59 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_60 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_61 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_62 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_63 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_64 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_65 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_66 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_67 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_68 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_69 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_70 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_71 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_72 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_73 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_74 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_75 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_76 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_77 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_78 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_79 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_80 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_81 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_82 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_83 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_84 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_85 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_86 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_87 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_88 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_89 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_90 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_91 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_92 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_93 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_94 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_95 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_96 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_97 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_98 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_99 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_100 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_101 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_102 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_103 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_104 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_105 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_106 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_107 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_108 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_109 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_110 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_111 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_112 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_113 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_115 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_116 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_117 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_118 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_119 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_120 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_121 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_122 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_124 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_125 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_126 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_127 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_128 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_129 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_130 | 1.0 | 0.0 | 1.0 |
| LCFFBKCJ_131 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_132 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_133 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_134 | 0.0 | 1.0 | 0.0 |
| LCFFBKCJ_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCFFBKCJ_85 | 23125 | 31010 | False | Unknown | VOG4573, |
| LCFFBKCJ_92 | 27180 | 34588 | False | Unknown | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)