Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLIHOFKN_57 | 224959 | 225849 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| JLIHOFKN_23 | 30348 | 31313 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| JLIHOFKN_23 | 27030 | 28955 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JLIHOFKN_56 | 1856 | 2593 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLIHOFKN_23 | 30348 | 31313 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| JLIHOFKN_23 | 30348 | 31313 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| JLIHOFKN_23 | 30348 | 31313 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| JLIHOFKN_23 | 30348 | 31313 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| JLIHOFKN_23 | 27030 | 28955 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JLIHOFKN_56 | 1856 | 2593 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLIHOFKN_23 | 30348 | 31310 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| JLIHOFKN_23 | 27030 | 28952 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JLIHOFKN_57 | 224962 | 225849 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| JLIHOFKN_56 | 1859 | 2593 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JLIHOFKN_61 | 1786 | 2366 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLIHOFKN_3 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_5 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_6 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_7 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_8 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_9 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_10 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_11 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_12 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_13 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_14 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_15 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_16 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_17 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_18 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_19 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_20 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_21 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_22 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_23 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_24 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_25 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_26 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_27 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_28 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_29 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_30 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_31 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_32 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_33 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_34 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_35 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_36 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_37 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_38 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_39 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_40 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_41 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_42 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_43 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_44 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_45 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_46 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_47 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_48 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_49 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_51 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_52 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_53 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_54 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_55 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_56 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_57 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_58 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_59 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_60 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_61 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_62 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_63 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_64 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_65 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_66 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_67 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_68 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_69 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_70 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_71 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_72 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_73 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_74 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_75 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_76 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_77 | 1.0 | 0.0 | 1.0 |
| JLIHOFKN_79 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_85 | 0.0 | 1.0 | 0.0 |
| JLIHOFKN_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLIHOFKN_5 | 159241 | 170156 | False | Unknown | VOG4568, |
| JLIHOFKN_7 | 18913 | 25982 | True | Siphoviridae | VOG7108, |
Phigaro v2.4.0 (Database: Jan. 2024 release)