Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLAPFIEB_3 | 168499 | 169389 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| PLAPFIEB_19 | 34386 | 36359 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| PLAPFIEB_4 | 3165 | 3965 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| PLAPFIEB_4 | 1816 | 2952 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PLAPFIEB_4 | 3165 | 3965 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PLAPFIEB_19 | 34386 | 36311 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PLAPFIEB_4 | 1786 | 2952 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| PLAPFIEB_10 | 67162 | 68112 | cfxA3 | Ampicillin | 85.91 | 98.34 | AF472622 |
| PLAPFIEB_10 | 67162 | 68112 | cfxA4 | Unknown Beta-lactam | 85.91 | 98.34 | AY769933 |
| PLAPFIEB_10 | 67162 | 68112 | cfxA5 | Unknown Beta-lactam | 85.91 | 98.34 | AY769934 |
| PLAPFIEB_10 | 67162 | 68112 | cfxA | Cefoxitin, Ampicillin | 85.91 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLAPFIEB_4 | 3168 | 3965 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PLAPFIEB_19 | 34389 | 36311 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PLAPFIEB_4 | 1786 | 2949 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
| PLAPFIEB_3 | 168499 | 169386 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| PLAPFIEB_10 | 67161 | 68114 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.33 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLAPFIEB_2 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_3 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_4 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_5 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_6 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_7 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_8 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_9 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_10 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_11 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_12 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_13 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_14 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_15 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_16 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_17 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_18 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_19 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_20 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_21 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_22 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_23 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_24 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_25 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_26 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_27 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_28 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_29 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_30 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_31 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_32 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_33 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_34 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_35 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_36 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_37 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_38 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_39 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_40 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_41 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_43 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_44 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_45 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_46 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_47 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_49 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_50 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_51 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_52 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_53 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_54 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_55 | 1.0 | 0.0 | 1.0 |
| PLAPFIEB_62 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_64 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_66 | 0.0 | 1.0 | 0.0 |
| PLAPFIEB_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLAPFIEB_64 | 150772 | 162763 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)