Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMEEPNNO_6 | 168499 | 169389 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| NMEEPNNO_20 | 71404 | 72540 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| NMEEPNNO_20 | 70391 | 71191 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| NMEEPNNO_25 | 34386 | 36359 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NMEEPNNO_20 | 70391 | 71191 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| NMEEPNNO_25 | 34386 | 36311 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NMEEPNNO_20 | 71404 | 72570 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| NMEEPNNO_13 | 67797 | 68747 | cfxA3 | Ampicillin | 85.91 | 98.34 | AF472622 |
| NMEEPNNO_13 | 67797 | 68747 | cfxA4 | Unknown Beta-lactam | 85.91 | 98.34 | AY769933 |
| NMEEPNNO_13 | 67797 | 68747 | cfxA5 | Unknown Beta-lactam | 85.91 | 98.34 | AY769934 |
| NMEEPNNO_13 | 67797 | 68747 | cfxA | Cefoxitin, Ampicillin | 85.91 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMEEPNNO_20 | 70391 | 71188 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| NMEEPNNO_25 | 34389 | 36311 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NMEEPNNO_20 | 71407 | 72570 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
| NMEEPNNO_6 | 168499 | 169386 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| NMEEPNNO_13 | 67796 | 68749 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.33 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMEEPNNO_1 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_4 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_6 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_7 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_8 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_9 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_10 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_11 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_12 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_13 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_14 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_15 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_16 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_17 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_19 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_20 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_21 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_22 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_23 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_24 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_25 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_26 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_27 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_28 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_29 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_30 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_31 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_32 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_33 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_34 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_35 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_36 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_37 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_38 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_39 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_40 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_41 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_42 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_43 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_44 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_46 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_47 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_48 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_49 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_50 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_51 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_53 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_54 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_55 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_56 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_57 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_58 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_59 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_60 | 1.0 | 0.0 | 1.0 |
| NMEEPNNO_64 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_68 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_70 | 0.0 | 1.0 | 0.0 |
| NMEEPNNO_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMEEPNNO_68 | 150772 | 162763 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)