Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIHDKNKB_94 | 46292 | 47257 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| IIHDKNKB_103 | 23300 | 24505 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| IIHDKNKB_110 | 15778 | 17751 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IIHDKNKB_110 | 15826 | 17751 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| IIHDKNKB_94 | 46292 | 47257 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| IIHDKNKB_94 | 46292 | 47257 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| IIHDKNKB_94 | 46292 | 47257 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| IIHDKNKB_94 | 46292 | 47257 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIHDKNKB_103 | 22766 | 23275 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| IIHDKNKB_110 | 15826 | 17748 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| IIHDKNKB_94 | 46295 | 47257 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| IIHDKNKB_103 | 23303 | 24505 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IIHDKNKB_63 | 60078 | 61658 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IIHDKNKB_8 | 113 | 693 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIHDKNKB_1 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_2 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_3 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_4 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_5 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_6 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_7 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_8 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_9 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_10 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_11 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_12 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_13 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_14 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_15 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_16 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_17 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_18 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_19 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_20 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_21 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_22 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_23 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_24 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_25 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_26 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_27 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_28 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_29 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_30 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_31 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_32 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_33 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_34 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_35 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_36 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_44 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_55 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_63 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_69 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_70 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_71 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_72 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_73 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_74 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_75 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_76 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_77 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_78 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_79 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_80 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_81 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_82 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_83 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_84 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_85 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_86 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_87 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_88 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_89 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_90 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_91 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_92 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_93 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_94 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_95 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_96 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_97 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_98 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_99 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_100 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_101 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_102 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_103 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_104 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_105 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_106 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_107 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_108 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_109 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_110 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_111 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_112 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_113 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_114 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_115 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_116 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_117 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_118 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_119 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_120 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_121 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_122 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_123 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_124 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_125 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_126 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_127 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_128 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_129 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_130 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_131 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_132 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_133 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_134 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_135 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_136 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_137 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_138 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_139 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_140 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_141 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_142 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_143 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_144 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_145 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_146 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_147 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_148 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_149 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_150 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_151 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_152 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_154 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_155 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_156 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_157 | 1.0 | 0.0 | 1.0 |
| IIHDKNKB_158 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_159 | 0.0 | 1.0 | 0.0 |
| IIHDKNKB_160 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)