Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEHMLBFL_101 | 46292 | 47257 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| LEHMLBFL_147 | 15778 | 17752 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| LEHMLBFL_112 | 14353 | 15558 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEHMLBFL_147 | 15826 | 17751 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LEHMLBFL_101 | 46292 | 47257 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| LEHMLBFL_101 | 46292 | 47257 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| LEHMLBFL_101 | 46292 | 47257 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| LEHMLBFL_101 | 46292 | 47257 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEHMLBFL_112 | 15583 | 16092 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LEHMLBFL_147 | 15826 | 17748 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LEHMLBFL_101 | 46295 | 47257 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| LEHMLBFL_112 | 14353 | 15555 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEHMLBFL_87 | 10670 | 9090 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LEHMLBFL_49 | 66 | 646 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEHMLBFL_2 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_3 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_4 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_5 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_6 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_7 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_8 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_9 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_10 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_11 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_12 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_13 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_14 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_15 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_16 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_17 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_18 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_19 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_20 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_21 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_22 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_23 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_24 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_25 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_26 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_27 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_28 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_29 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_30 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_31 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_32 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_33 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_34 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_35 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_36 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_37 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_38 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_39 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_40 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_41 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_43 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_52 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_60 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_65 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_68 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_70 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_73 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_74 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_80 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_82 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_84 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_85 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_86 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_87 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_88 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_89 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_90 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_91 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_92 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_93 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_94 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_95 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_96 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_97 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_98 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_99 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_100 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_101 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_102 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_103 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_104 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_105 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_106 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_107 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_108 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_109 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_110 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_111 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_112 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_113 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_114 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_115 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_116 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_117 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_118 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_119 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_120 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_121 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_122 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_123 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_124 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_125 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_126 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_127 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_128 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_129 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_130 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_131 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_132 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_133 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_134 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_135 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_136 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_137 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_138 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_139 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_140 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_141 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_142 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_143 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_144 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_145 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_146 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_147 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_148 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_149 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_150 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_151 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_152 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_153 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_154 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_155 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_156 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_157 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_158 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_159 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_160 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_161 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_162 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_163 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_164 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_165 | 1.0 | 0.0 | 1.0 |
| LEHMLBFL_166 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_167 | 0.0 | 1.0 | 0.0 |
| LEHMLBFL_168 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)