Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGCPCJHF_38 | 243850 | 245775 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LGCPCJHF_38 | 40044 | 40934 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGCPCJHF_38 | 243850 | 245775 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LGCPCJHF_78 | 107399 | 108616 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGCPCJHF_38 | 40044 | 40931 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| LGCPCJHF_38 | 243853 | 245775 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LGCPCJHF_78 | 107396 | 108616 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGCPCJHF_4 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_5 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_8 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_9 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_10 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_11 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_12 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_13 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_14 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_15 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_16 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_17 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_18 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_19 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_20 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_21 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_22 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_23 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_24 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_25 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_26 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_27 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_28 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_29 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_30 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_31 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_32 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_33 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_34 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_35 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_36 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_37 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_38 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_39 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_40 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_41 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_42 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_43 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_44 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_45 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_46 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_47 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_48 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_50 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_51 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_52 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_53 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_54 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_55 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_56 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_57 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_58 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_59 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_60 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_61 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_62 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_63 | 1.0 | 0.0 | 1.0 |
| LGCPCJHF_64 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_65 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_70 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_75 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_78 | 0.0 | 1.0 | 0.0 |
| LGCPCJHF_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LGCPCJHF_15 | 24606 | 36372 | False | Unknown | VOG4690, |
| LGCPCJHF_70 | 166093 | 180453 | False | Unknown | VOG8932, |
Phigaro v2.4.0 (Database: Jan. 2024 release)