Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAKMIPFD_34 | 165730 | 166620 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| OAKMIPFD_42 | 60751 | 61485 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| OAKMIPFD_73 | 9805 | 11730 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OAKMIPFD_34 | 75780 | 76646 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| OAKMIPFD_73 | 9805 | 11730 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| OAKMIPFD_42 | 60751 | 61485 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| OAKMIPFD_42 | 62257 | 63720 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| OAKMIPFD_42 | 63846 | 64787 | mef(A) | Erythromycin, Azithromycin | 93.95 | 77.34 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAKMIPFD_34 | 75780 | 76643 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| OAKMIPFD_42 | 60754 | 61485 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| OAKMIPFD_73 | 9808 | 11730 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OAKMIPFD_34 | 165733 | 166620 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| OAKMIPFD_42 | 62260 | 63720 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| OAKMIPFD_42 | 63837 | 64784 | mef(A) | macrolide efflux MFS transporter Mef(A) | PARTIALX | 95.57 | 77.45 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OAKMIPFD_112 | 1969 | 2648 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAKMIPFD_1 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_2 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_3 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_4 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_11 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_22 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_26 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_27 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_28 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_29 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_30 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_31 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_32 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_33 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_34 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_35 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_36 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_37 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_38 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_39 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_40 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_41 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_42 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_43 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_44 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_45 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_46 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_47 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_48 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_49 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_50 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_51 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_52 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_53 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_54 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_55 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_56 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_57 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_58 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_59 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_60 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_61 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_62 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_63 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_64 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_65 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_66 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_67 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_68 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_69 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_70 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_71 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_72 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_73 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_74 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_75 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_76 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_77 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_78 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_79 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_80 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_81 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_82 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_83 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_84 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_85 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_86 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_87 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_88 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_89 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_90 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_91 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_92 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_93 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_94 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_95 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_97 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_98 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_99 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_100 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_101 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_102 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_103 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_104 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_105 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_106 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_107 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_108 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_109 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_110 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_111 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_112 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_113 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_114 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_115 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_116 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_117 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_118 | 1.0 | 0.0 | 1.0 |
| OAKMIPFD_119 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_120 | 0.0 | 1.0 | 0.0 |
| OAKMIPFD_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAKMIPFD_38 | 22392 | 35459 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)