Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MGHHGNCP_21 | 165730 | 166620 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| MGHHGNCP_55 | 9805 | 11730 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| MGHHGNCP_30 | 4244 | 4978 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MGHHGNCP_21 | 75780 | 76646 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| MGHHGNCP_55 | 9805 | 11730 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| MGHHGNCP_30 | 4244 | 4978 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| MGHHGNCP_30 | 2009 | 3472 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| MGHHGNCP_30 | 942 | 1883 | mef(A) | Erythromycin, Azithromycin | 93.95 | 77.34 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MGHHGNCP_21 | 75780 | 76643 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| MGHHGNCP_30 | 4244 | 4975 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| MGHHGNCP_55 | 9808 | 11730 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| MGHHGNCP_21 | 165733 | 166620 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| MGHHGNCP_30 | 2009 | 3469 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| MGHHGNCP_30 | 945 | 1892 | mef(A) | macrolide efflux MFS transporter Mef(A) | PARTIALX | 95.57 | 77.45 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MGHHGNCP_90 | 1 | 668 | repUS2 | 670 / 681 | 98.51 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MGHHGNCP_9 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_12 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_13 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_14 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_15 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_16 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_17 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_18 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_19 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_20 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_21 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_22 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_23 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_24 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_25 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_26 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_27 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_28 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_29 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_30 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_31 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_32 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_33 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_34 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_35 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_36 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_37 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_38 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_39 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_40 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_41 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_42 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_43 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_44 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_45 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_46 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_47 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_48 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_49 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_50 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_51 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_52 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_53 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_54 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_55 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_56 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_57 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_58 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_59 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_60 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_61 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_62 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_63 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_64 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_65 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_66 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_67 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_68 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_69 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_70 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_71 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_72 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_73 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_74 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_75 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_76 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_78 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_79 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_80 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_81 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_82 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_83 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_84 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_85 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_86 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_87 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_88 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_89 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_90 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_91 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_92 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_93 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_94 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_95 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_96 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_97 | 0.0 | 1.0 | 0.0 |
| MGHHGNCP_98 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_99 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_100 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_101 | 1.0 | 0.0 | 1.0 |
| MGHHGNCP_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MGHHGNCP_27 | 22392 | 35459 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)