Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMJPKEKF_101 | 173891 | 175816 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GMJPKEKF_66 | 20690 | 21592 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GMJPKEKF_66 | 20690 | 21592 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| GMJPKEKF_101 | 173891 | 175816 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMJPKEKF_66 | 20690 | 21589 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| GMJPKEKF_101 | 173891 | 175813 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMJPKEKF_11 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_22 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_33 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_42 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_50 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_53 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_54 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_55 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_56 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_57 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_58 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_59 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_60 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_61 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_62 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_63 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_64 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_65 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_66 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_67 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_68 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_69 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_70 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_71 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_72 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_73 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_74 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_75 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_76 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_77 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_78 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_79 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_80 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_81 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_82 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_83 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_84 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_85 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_86 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_87 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_88 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_89 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_90 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_91 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_92 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_93 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_94 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_95 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_96 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_98 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_99 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_100 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_101 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_102 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_103 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_104 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_105 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_106 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_107 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_108 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_109 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_110 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_111 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_112 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_113 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_114 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_115 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_116 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_117 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_118 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_119 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_120 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_121 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_122 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_123 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_124 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_125 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_126 | 1.0 | 0.0 | 1.0 |
| GMJPKEKF_134 | 0.0 | 1.0 | 0.0 |
| GMJPKEKF_145 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMJPKEKF_11 | 150270 | 157722 | False | Unknown | VOG0982, |
| GMJPKEKF_58 | 352378 | 365456 | False | Siphoviridae | VOG11071, |
Phigaro v2.4.0 (Database: Jan. 2024 release)