Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHKNLCEO_39 | 348042 | 349247 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JHKNLCEO_51 | 48871 | 49671 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| JHKNLCEO_51 | 47426 | 48565 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| JHKNLCEO_51 | 46091 | 47227 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| JHKNLCEO_51 | 45052 | 45915 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| JHKNLCEO_76 | 6111 | 6906 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 98.86 | CP004067.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHKNLCEO_76 | 6111 | 6905 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| JHKNLCEO_51 | 48871 | 49671 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| JHKNLCEO_51 | 46091 | 47257 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHKNLCEO_51 | 45055 | 45915 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| JHKNLCEO_76 | 6111 | 6902 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| JHKNLCEO_51 | 47429 | 48565 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| JHKNLCEO_51 | 46094 | 47257 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| JHKNLCEO_51 | 48871 | 49668 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| JHKNLCEO_39 | 348042 | 349244 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JHKNLCEO_39 | 349272 | 349745 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 98.10 | 92.94 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JHKNLCEO_92 | 407 | 1086 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHKNLCEO_10 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_16 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_22 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_30 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_33 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_34 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_35 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_36 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_37 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_38 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_39 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_40 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_41 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_42 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_43 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_44 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_45 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_46 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_47 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_48 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_49 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_50 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_51 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_52 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_53 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_54 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_55 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_56 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_57 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_58 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_59 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_60 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_61 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_62 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_63 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_64 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_65 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_66 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_67 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_68 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_69 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_70 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_71 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_72 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_73 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_74 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_75 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_76 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_77 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_78 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_79 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_81 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_82 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_83 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_84 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_85 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_86 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_87 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_88 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_89 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_90 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_91 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_92 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_93 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_94 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_95 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_96 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_97 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_98 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_99 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_100 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_101 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_102 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_103 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_104 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_105 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_106 | 1.0 | 0.0 | 1.0 |
| JHKNLCEO_107 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_108 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_109 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_115 | 0.0 | 1.0 | 0.0 |
| JHKNLCEO_126 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)