Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFMCFGMG_18 | 165730 | 166620 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| EFMCFGMG_49 | 9805 | 11730 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| EFMCFGMG_24 | 4244 | 4978 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFMCFGMG_18 | 75780 | 76646 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| EFMCFGMG_49 | 9805 | 11730 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| EFMCFGMG_24 | 4244 | 4978 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| EFMCFGMG_24 | 2009 | 3472 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| EFMCFGMG_24 | 942 | 1883 | mef(A) | Erythromycin, Azithromycin | 93.95 | 77.34 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFMCFGMG_18 | 75780 | 76643 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| EFMCFGMG_24 | 4244 | 4975 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| EFMCFGMG_49 | 9808 | 11730 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| EFMCFGMG_18 | 165733 | 166620 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| EFMCFGMG_24 | 2009 | 3469 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| EFMCFGMG_24 | 945 | 1892 | mef(A) | macrolide efflux MFS transporter Mef(A) | PARTIALX | 95.57 | 77.45 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFMCFGMG_82 | 341 | 1020 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFMCFGMG_6 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_9 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_10 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_11 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_12 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_13 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_14 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_15 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_16 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_17 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_18 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_19 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_20 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_21 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_22 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_23 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_24 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_25 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_26 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_27 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_28 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_29 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_30 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_31 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_32 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_33 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_34 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_35 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_36 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_37 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_38 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_39 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_40 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_41 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_42 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_43 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_44 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_45 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_46 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_47 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_48 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_49 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_50 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_51 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_52 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_53 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_54 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_55 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_56 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_57 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_58 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_59 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_60 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_61 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_62 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_63 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_64 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_65 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_66 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_67 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_68 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_69 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_71 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_72 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_73 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_74 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_75 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_76 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_77 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_78 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_79 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_80 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_81 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_82 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_83 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_84 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_85 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_86 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_87 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_88 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_89 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_90 | 1.0 | 0.0 | 1.0 |
| EFMCFGMG_94 | 0.0 | 1.0 | 0.0 |
| EFMCFGMG_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)