Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLKNONNC_67 | 139017 | 140222 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GLKNONNC_101 | 27922 | 29847 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| GLKNONNC_123 | 12949 | 14655 | tet(Q) | ARO:3000191 | tet(Q) | 96.66 | 86.61 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GLKNONNC_123 | 12949 | 14657 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.82 | 88.73 | L33696 |
| GLKNONNC_67 | 55 | 601 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.90 | 74.42 | M15332 |
| GLKNONNC_57 | 1361 | 2824 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| GLKNONNC_57 | 2950 | 4164 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLKNONNC_67 | 140247 | 140756 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GLKNONNC_67 | 139017 | 140219 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| GLKNONNC_123 | 12949 | 14655 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.47 | 88.77 | WP_063856407.1 |
| GLKNONNC_67 | 56 | 598 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 98.90 | 74.18 | WP_063844791.1 |
| GLKNONNC_57 | 1364 | 2824 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| GLKNONNC_57 | 2941 | 4164 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| GLKNONNC_101 | 27925 | 29847 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GLKNONNC_149 | 1211 | 1890 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLKNONNC_1 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_2 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_3 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_4 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_6 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_7 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_8 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_9 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_10 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_11 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_12 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_13 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_14 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_15 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_16 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_17 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_18 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_19 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_22 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_30 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_39 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_46 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_53 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_57 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_61 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_65 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_66 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_67 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_68 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_69 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_70 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_71 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_72 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_73 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_74 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_75 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_76 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_77 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_78 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_79 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_80 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_81 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_82 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_83 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_84 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_85 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_86 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_87 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_88 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_89 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_90 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_91 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_92 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_93 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_94 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_95 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_96 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_97 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_98 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_99 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_100 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_101 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_102 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_103 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_104 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_105 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_106 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_107 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_108 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_109 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_110 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_111 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_112 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_113 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_114 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_115 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_116 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_117 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_118 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_119 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_120 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_121 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_122 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_123 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_124 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_125 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_126 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_127 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_128 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_129 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_130 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_131 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_132 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_133 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_134 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_135 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_136 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_137 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_138 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_139 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_140 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_141 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_142 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_143 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_144 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_145 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_146 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_147 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_149 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_150 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_151 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_152 | 0.0 | 1.0 | 0.0 |
| GLKNONNC_153 | 1.0 | 0.0 | 1.0 |
| GLKNONNC_154 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)