Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DIFPGAIF_35 | 139017 | 140222 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| DIFPGAIF_95 | 27922 | 29847 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| DIFPGAIF_105 | 12949 | 14874 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DIFPGAIF_105 | 12949 | 14874 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DIFPGAIF_35 | 55 | 601 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.90 | 74.42 | M15332 |
| DIFPGAIF_26 | 1024 | 2487 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| DIFPGAIF_26 | 2613 | 3827 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DIFPGAIF_35 | 140247 | 140756 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| DIFPGAIF_105 | 12949 | 14871 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DIFPGAIF_35 | 139017 | 140219 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| DIFPGAIF_35 | 56 | 598 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 98.90 | 74.18 | WP_063844791.1 |
| DIFPGAIF_26 | 1027 | 2487 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| DIFPGAIF_26 | 2604 | 3827 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| DIFPGAIF_95 | 27925 | 29847 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DIFPGAIF_1 | 323 | 1002 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DIFPGAIF_1 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_2 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_3 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_4 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_5 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_6 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_7 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_8 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_9 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_11 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_12 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_13 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_15 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_17 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_18 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_19 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_20 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_21 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_22 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_24 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_26 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_28 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_29 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_33 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_34 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_35 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_37 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_38 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_39 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_41 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_42 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_44 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_46 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_47 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_50 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_51 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_52 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_54 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_55 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_56 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_58 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_60 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_61 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_66 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_67 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_68 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_69 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_70 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_71 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_73 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_74 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_77 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_78 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_79 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_80 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_81 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_82 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_83 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_84 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_85 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_86 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_87 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_88 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_89 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_90 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_92 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_93 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_94 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_95 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_96 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_97 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_99 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_101 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_103 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_104 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_105 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_106 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_107 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_108 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_109 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_110 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_111 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_112 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_114 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_115 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_116 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_117 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_118 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_119 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_120 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_121 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_122 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_123 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_125 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_126 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_127 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_128 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_129 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_130 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_131 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_132 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_133 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_134 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_135 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_136 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_137 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_138 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_139 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_140 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_141 | 0.0 | 1.0 | 0.0 |
| DIFPGAIF_143 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_144 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_145 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_147 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_148 | 1.0 | 0.0 | 1.0 |
| DIFPGAIF_150 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)