Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AICKCFPO_14 | 92906 | 94111 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| AICKCFPO_11 | 9221 | 11146 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| AICKCFPO_16 | 136 | 1101 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AICKCFPO_16 | 136 | 1101 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| AICKCFPO_16 | 136 | 1101 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| AICKCFPO_16 | 136 | 1101 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| AICKCFPO_16 | 136 | 1101 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| AICKCFPO_11 | 9221 | 11146 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AICKCFPO_16 | 136 | 1098 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| AICKCFPO_11 | 9221 | 11143 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| AICKCFPO_14 | 92372 | 92881 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| AICKCFPO_14 | 92909 | 94111 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AICKCFPO_1 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_2 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_3 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_4 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_5 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_6 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_7 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_8 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_9 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_10 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_11 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_12 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_13 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_14 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_15 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_16 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_17 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_18 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_19 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_20 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_21 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_22 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_23 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_24 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_25 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_26 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_27 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_28 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_29 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_30 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_31 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_32 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_33 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_34 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_35 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_36 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_37 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_38 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_39 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_40 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_41 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_42 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_43 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_44 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_45 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_46 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_47 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_48 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_49 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_51 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_52 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_54 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_55 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_56 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_57 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_58 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_59 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_60 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_61 | 1.0 | 0.0 | 1.0 |
| AICKCFPO_67 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_78 | 0.0 | 1.0 | 0.0 |
| AICKCFPO_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)