Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIKMDHIE_1 | 295322 | 297247 | tet(Q) | ARO:3000191 | tet(Q) | 98.13 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CIKMDHIE_1 | 295322 | 297247 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.34 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIKMDHIE_1 | 295325 | 297247 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.13 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CIKMDHIE_106 | 1742 | 2421 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIKMDHIE_1 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_2 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_12 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_22 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_33 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_38 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_39 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_40 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_41 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_42 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_43 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_44 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_45 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_46 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_47 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_48 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_49 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_50 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_51 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_52 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_53 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_54 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_55 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_56 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_57 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_58 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_59 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_60 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_61 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_62 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_63 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_64 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_65 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_66 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_67 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_68 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_69 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_70 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_71 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_72 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_73 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_74 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_75 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_76 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_77 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_78 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_79 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_80 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_81 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_82 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_83 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_84 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_85 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_86 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_87 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_88 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_89 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_90 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_91 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_92 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_93 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_94 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_95 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_96 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_97 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_98 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_99 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_100 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_102 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_103 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_104 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_105 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_106 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_107 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_108 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_109 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_110 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_111 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_112 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_113 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_114 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_115 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_116 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_117 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_118 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_119 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_120 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_121 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_122 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_123 | 0.0 | 1.0 | 0.0 |
| CIKMDHIE_124 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_125 | 1.0 | 0.0 | 1.0 |
| CIKMDHIE_126 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIKMDHIE_55 | 165711 | 169704 | False | Unknown | VOG1792, |
| CIKMDHIE_75 | 5594 | 13479 | False | Unknown | VOG0572, |
| CIKMDHIE_110 | 160629 | 164698 | False | Unknown | VOG0189, |
Phigaro v2.4.0 (Database: Jan. 2024 release)