Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPAPFBNM_186 | 13252 | 14052 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| HPAPFBNM_183 | 4409 | 5143 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| HPAPFBNM_146 | 2935 | 3798 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HPAPFBNM_146 | 1623 | 2759 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| HPAPFBNM_146 | 285 | 1424 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HPAPFBNM_186 | 13252 | 14052 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| HPAPFBNM_183 | 4409 | 5143 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | M15332 |
| HPAPFBNM_146 | 1593 | 2759 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| HPAPFBNM_118 | 65892 | 67109 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPAPFBNM_146 | 2935 | 3795 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HPAPFBNM_146 | 1593 | 2756 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| HPAPFBNM_146 | 285 | 1421 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| HPAPFBNM_186 | 13255 | 14052 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| HPAPFBNM_183 | 4409 | 5140 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_014387027.1 |
| HPAPFBNM_118 | 65892 | 67112 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPAPFBNM_1 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_2 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_3 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_4 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_5 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_6 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_7 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_8 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_9 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_10 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_11 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_12 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_13 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_14 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_15 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_16 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_17 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_18 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_19 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_20 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_21 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_22 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_23 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_24 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_25 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_26 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_27 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_29 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_30 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_31 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_32 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_34 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_35 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_36 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_37 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_38 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_39 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_40 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_41 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_42 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_43 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_44 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_46 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_57 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_68 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_79 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_90 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_101 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_104 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_105 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_106 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_107 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_108 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_109 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_110 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_111 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_112 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_113 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_114 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_115 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_116 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_117 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_118 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_119 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_120 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_121 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_122 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_123 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_124 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_125 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_126 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_127 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_128 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_129 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_130 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_131 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_132 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_133 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_134 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_135 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_136 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_137 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_138 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_139 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_140 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_141 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_142 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_143 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_144 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_145 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_146 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_147 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_148 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_149 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_150 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_151 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_152 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_153 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_154 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_155 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_156 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_157 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_158 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_159 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_160 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_161 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_162 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_163 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_164 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_165 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_166 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_167 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_168 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_169 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_170 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_171 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_172 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_173 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_174 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_175 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_176 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_177 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_178 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_179 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_180 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_181 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_182 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_183 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_184 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_185 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_186 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_187 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_188 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_189 | 1.0 | 0.0 | 1.0 |
| HPAPFBNM_190 | 0.0 | 1.0 | 0.0 |
| HPAPFBNM_191 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPAPFBNM_13 | 52276 | 58127 | False | Myoviridae | VOG0982, |
| HPAPFBNM_148 | 66089 | 74274 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)