Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ENMPDONF_35 | 97774 | 98739 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| ENMPDONF_24 | 55523 | 57448 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ENMPDONF_24 | 55523 | 57448 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| ENMPDONF_35 | 97774 | 98739 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| ENMPDONF_35 | 97774 | 98739 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| ENMPDONF_35 | 97774 | 98739 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| ENMPDONF_35 | 97774 | 98739 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| ENMPDONF_96 | 6097 | 7314 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ENMPDONF_35 | 97777 | 98739 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| ENMPDONF_24 | 55523 | 57445 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| ENMPDONF_96 | 6094 | 7314 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ENMPDONF_28 | 29936 | 31516 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ENMPDONF_1 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_2 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_13 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_22 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_23 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_24 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_25 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_26 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_27 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_28 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_29 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_30 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_31 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_32 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_33 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_34 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_35 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_36 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_37 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_38 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_39 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_40 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_41 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_42 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_43 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_44 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_45 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_46 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_47 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_48 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_49 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_50 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_51 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_52 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_53 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_54 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_55 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_56 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_57 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_58 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_59 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_60 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_61 | 1.0 | 0.0 | 1.0 |
| ENMPDONF_62 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_63 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_64 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_65 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_66 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_67 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_68 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_69 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_70 | 1.0 | 0.0 | 1.0 |
| ENMPDONF_71 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_72 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_73 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_74 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_75 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_76 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_77 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_78 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_79 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_80 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_81 | 1.0 | 0.0 | 1.0 |
| ENMPDONF_82 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_83 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_84 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_85 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_86 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_87 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_88 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_89 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_90 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_91 | 1.0 | 0.0 | 1.0 |
| ENMPDONF_93 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_94 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_95 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_96 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_97 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_98 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_99 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_100 | 1.0 | 0.0 | 1.0 |
| ENMPDONF_101 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_102 | 0.0 | 1.0 | 0.0 |
| ENMPDONF_103 | 1.0 | 0.0 | 1.0 |
| ENMPDONF_107 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)