Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPDNJPGK_109 | 61930 | 62895 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| EPDNJPGK_72 | 1670 | 3643 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EPDNJPGK_109 | 61930 | 62895 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| EPDNJPGK_109 | 61930 | 62895 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| EPDNJPGK_109 | 61930 | 62895 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| EPDNJPGK_109 | 61930 | 62895 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| EPDNJPGK_72 | 1670 | 3595 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPDNJPGK_109 | 61933 | 62895 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| EPDNJPGK_72 | 1673 | 3595 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPDNJPGK_1 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_2 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_10 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_17 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_22 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_28 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_32 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_37 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_44 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_53 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_59 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_61 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_62 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_63 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_64 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_65 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_66 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_67 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_68 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_69 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_70 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_71 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_72 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_73 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_74 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_75 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_76 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_77 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_78 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_79 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_80 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_81 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_82 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_83 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_84 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_85 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_86 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_87 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_88 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_89 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_90 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_91 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_92 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_93 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_94 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_95 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_96 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_97 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_99 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_100 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_101 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_102 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_103 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_104 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_105 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_106 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_107 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_108 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_109 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_110 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_111 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_112 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_113 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_114 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_115 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_117 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_118 | 0.0 | 1.0 | 0.0 |
| EPDNJPGK_119 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_120 | 1.0 | 0.0 | 1.0 |
| EPDNJPGK_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)