Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCAIKFNJ_120 | 137454 | 137942 | nimE | ARO:3007107 | nimE | 80.86 | 95.29 | CP036548.1 |
| CCAIKFNJ_37 | 93661 | 95586 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CCAIKFNJ_83 | 26116 | 27321 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CCAIKFNJ_107 | 9161 | 10126 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| CCAIKFNJ_122 | 122 | 856 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CCAIKFNJ_122 | 122 | 856 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | M15332 |
| CCAIKFNJ_37 | 93661 | 95586 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CCAIKFNJ_107 | 9161 | 10126 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| CCAIKFNJ_107 | 9161 | 10126 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| CCAIKFNJ_107 | 9161 | 10126 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| CCAIKFNJ_107 | 9161 | 10126 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| CCAIKFNJ_66 | 42638 | 43855 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
| CCAIKFNJ_120 | 137454 | 137933 | nimE | Metronidazole | 81.25 | 93.57 | AM042593 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCAIKFNJ_83 | 27346 | 27855 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CCAIKFNJ_107 | 9164 | 10126 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| CCAIKFNJ_122 | 122 | 853 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_014387027.1 |
| CCAIKFNJ_37 | 93664 | 95586 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CCAIKFNJ_83 | 26116 | 27318 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CCAIKFNJ_66 | 42638 | 43858 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| CCAIKFNJ_120 | 137454 | 137939 | nimE | 5-nitroimidazole reductase NimE | BLASTX | 80.86 | 95.29 | WP_005812773.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCAIKFNJ_48 | 51228 | 52808 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCAIKFNJ_1 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_2 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_3 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_4 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_5 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_6 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_7 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_8 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_9 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_10 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_11 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_13 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_24 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_35 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_37 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_38 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_39 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_40 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_41 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_42 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_43 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_44 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_45 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_46 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_47 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_48 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_49 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_50 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_51 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_52 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_53 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_54 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_55 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_56 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_57 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_58 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_59 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_60 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_61 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_62 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_63 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_64 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_65 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_66 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_67 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_68 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_69 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_70 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_71 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_72 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_73 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_74 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_75 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_76 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_77 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_78 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_79 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_80 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_81 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_82 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_83 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_84 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_85 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_86 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_87 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_88 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_89 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_90 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_91 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_92 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_93 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_94 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_95 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_96 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_97 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_98 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_99 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_100 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_101 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_102 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_103 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_104 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_105 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_106 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_107 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_108 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_109 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_110 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_111 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_112 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_113 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_114 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_115 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_116 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_117 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_119 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_120 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_121 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_122 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_123 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_124 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_125 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_126 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_127 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_128 | 0.0 | 1.0 | 0.0 |
| CCAIKFNJ_129 | 1.0 | 0.0 | 1.0 |
| CCAIKFNJ_130 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCAIKFNJ_54 | 175921 | 186795 | False | Siphoviridae | VOG0749, |
| CCAIKFNJ_109 | 141817 | 144462 | False | Myoviridae | VOG1931, |
Phigaro v2.4.0 (Database: Jan. 2024 release)