Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGDPFDCJ_56 | 23306 | 24196 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| KGDPFDCJ_51 | 16714 | 18639 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGDPFDCJ_51 | 16714 | 18639 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGDPFDCJ_51 | 16717 | 18639 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KGDPFDCJ_56 | 23309 | 24196 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGDPFDCJ_1 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_2 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_13 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_24 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_35 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_41 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_42 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_43 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_44 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_45 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_46 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_47 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_48 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_49 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_50 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_51 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_52 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_53 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_54 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_55 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_56 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_57 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_58 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_59 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_60 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_61 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_62 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_63 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_64 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_65 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_66 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_67 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_68 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_69 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_70 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_71 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_72 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_73 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_74 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_75 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_76 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_77 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_78 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_79 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_80 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_81 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_82 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_83 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_84 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_85 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_86 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_87 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_88 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_89 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_90 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_91 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_92 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_93 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_94 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_95 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_96 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_97 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_98 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_100 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_101 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_102 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_103 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_104 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_105 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_106 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_107 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_108 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_109 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_110 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_111 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_112 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_113 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_114 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_115 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_116 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_117 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_118 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_119 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_120 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_121 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_122 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_123 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_124 | 0.0 | 1.0 | 0.0 |
| KGDPFDCJ_125 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_126 | 1.0 | 0.0 | 1.0 |
| KGDPFDCJ_127 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGDPFDCJ_2 | 25120 | 41234 | False | Unknown | VOG0298, |
| KGDPFDCJ_13 | 111495 | 119066 | False | Siphoviridae | VOG0292, |
| KGDPFDCJ_49 | 67873 | 77070 | False | Unknown | VOG3992, |
| KGDPFDCJ_59 | 10913 | 22581 | False | Siphoviridae | VOG4624, |
| KGDPFDCJ_66 | 17090 | 27940 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)