Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBCKCIMO_64 | 60116 | 62041 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LBCKCIMO_70 | 23306 | 24196 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBCKCIMO_64 | 60116 | 62041 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBCKCIMO_64 | 60116 | 62038 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LBCKCIMO_70 | 23309 | 24196 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBCKCIMO_1 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_2 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_13 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_24 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_35 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_46 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_53 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_54 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_55 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_56 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_57 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_58 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_59 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_60 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_61 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_62 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_63 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_64 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_65 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_66 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_67 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_68 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_69 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_70 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_71 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_72 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_73 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_74 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_75 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_76 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_77 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_78 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_79 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_80 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_81 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_82 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_83 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_84 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_85 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_86 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_87 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_88 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_89 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_90 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_91 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_92 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_93 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_94 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_95 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_96 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_97 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_98 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_99 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_100 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_101 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_102 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_103 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_104 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_105 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_106 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_107 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_108 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_109 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_110 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_111 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_112 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_113 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_114 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_116 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_117 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_118 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_119 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_120 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_121 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_122 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_123 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_124 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_125 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_126 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_127 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_128 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_129 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_130 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_131 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_132 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_133 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_134 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_135 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_136 | 0.0 | 1.0 | 0.0 |
| LBCKCIMO_137 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_138 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_139 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_140 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_141 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_142 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_143 | 1.0 | 0.0 | 1.0 |
| LBCKCIMO_144 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBCKCIMO_2 | 25120 | 41234 | False | Unknown | VOG0298, |
| LBCKCIMO_35 | 8341 | 15912 | False | Siphoviridae | VOG4544, |
| LBCKCIMO_62 | 67873 | 77070 | False | Unknown | VOG3992, |
| LBCKCIMO_73 | 17030 | 28698 | False | Siphoviridae | VOG7268, |
| LBCKCIMO_78 | 3142 | 13992 | False | Unknown | VOG3699, |
Phigaro v2.4.0 (Database: Jan. 2024 release)