Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCGACPDB_2 | 53728 | 54933 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| OCGACPDB_40 | 138 | 1103 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OCGACPDB_40 | 138 | 1103 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| OCGACPDB_40 | 138 | 1103 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| OCGACPDB_40 | 138 | 1103 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| OCGACPDB_40 | 138 | 1103 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCGACPDB_2 | 53194 | 53703 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OCGACPDB_40 | 138 | 1100 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| OCGACPDB_2 | 53731 | 54933 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCGACPDB_47 | 89294 | 90874 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OCGACPDB_81 | 1742 | 2322 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCGACPDB_1 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_2 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_13 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_17 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_18 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_19 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_20 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_21 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_22 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_23 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_24 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_25 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_26 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_27 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_28 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_29 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_30 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_31 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_32 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_33 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_34 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_35 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_36 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_37 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_38 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_39 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_40 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_41 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_42 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_43 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_44 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_45 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_46 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_47 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_48 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_49 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_50 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_51 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_52 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_53 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_54 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_55 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_56 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_57 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_58 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_59 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_60 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_61 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_62 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_63 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_64 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_65 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_66 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_67 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_68 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_69 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_70 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_71 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_72 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_73 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_75 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_76 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_77 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_78 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_79 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_80 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_81 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_82 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_83 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_84 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_85 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_86 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_87 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_88 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_89 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_90 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_91 | 0.0 | 1.0 | 0.0 |
| OCGACPDB_92 | 1.0 | 0.0 | 1.0 |
| OCGACPDB_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCGACPDB_1 | 485256 | 500912 | False | Unknown | VOG4545, |
| OCGACPDB_102 | 84579 | 88799 | False | Myoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)