Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HJKGBEIB_1 | 823 | 953 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJKGBEIB_1 | 1.0 | 0.0 | 1.0 |
| HJKGBEIB_2 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_3 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_4 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_5 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_6 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_7 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_8 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_9 | 0.0 | 1.0 | 0.0 |
| HJKGBEIB_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJKGBEIB_3 | 1784 | 27180 | False | Siphoviridae | VOG4544, VOG0691, VOG0692, VOG5047, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG5859, VOG5008, VOG4705, VOG0861, VOG8181, VOG0703, VOG8294 |
| HJKGBEIB_3 | 322522 | 349597 | False | Siphoviridae | VOG5190, VOG0703, VOG5087, VOG0861, VOG4705, VOG9945, VOG4612, VOG4659, VOG4633, VOG4545, VOG0660, VOG4586, VOG0207, VOG10939, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0327 |
| HJKGBEIB_3 | 361253 | 397533 | False | Myoviridae | VOG3685, VOG6422, VOG0275, VOG10934, VOG0703, VOG5087, VOG0861, VOG4705, VOG9945, VOG5763, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG3636, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG4564, VOG0720, VOG4544, VOG1517, VOG0590, VOG4618, VOG1345, VOG0198 |
| HJKGBEIB_5 | 132048 | 158442 | False | Siphoviridae | VOG11003, VOG10043, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG6154, VOG4581, VOG4055, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)