Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGDBEMBB_33 | 35326 | 34622 | WalR | 8.72e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| CGDBEMBB_1 | 330209 | 330403 | CspR | 1.85e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CGDBEMBB_1 | 330209 | 330406 | CspA | 2.84e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGDBEMBB_1 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_2 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_3 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_4 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_5 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_6 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_7 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_8 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_9 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_10 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_11 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_12 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_13 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_14 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_15 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_16 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_17 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_18 | 1.0 | 0.0 | 1.0 |
| CGDBEMBB_19 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_21 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_22 | 1.0 | 0.0 | 1.0 |
| CGDBEMBB_23 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_24 | 1.0 | 0.0 | 1.0 |
| CGDBEMBB_26 | 1.0 | 0.0 | 1.0 |
| CGDBEMBB_29 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_30 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_31 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_32 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_33 | 0.0 | 1.0 | 0.0 |
| CGDBEMBB_34 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGDBEMBB_1 | 3699 | 27920 | False | Siphoviridae | VOG5258, VOG4567, VOG0198, VOG0418, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG1637 |
| CGDBEMBB_29 | 136533 | 167344 | False | Siphoviridae | VOG4552, VOG4693, VOG0198, VOG0045, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| CGDBEMBB_33 | 35930 | 47148 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609 |
| CGDBEMBB_34 | 49515 | 87865 | False | Siphoviridae | VOG1521, VOG5904, VOG0753, VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG5757, VOG0198, VOG3643, VOG0044, VOG6005, VOG0189, VOG4566, VOG0514, VOG6545, VOG0322, VOG0535, VOG0181, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)