Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KNFDGABE_1 | 165172 | 164978 | CspA | 1.63e-27 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KNFDGABE_34 | 9454 | 10444 | repUS67 | 1006 / 1039 | 86.38 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KNFDGABE_1 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_2 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_3 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_4 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_5 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_6 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_7 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_8 | 1.0 | 0.0 | 1.0 |
| KNFDGABE_9 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_10 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_11 | 1.0 | 0.0 | 1.0 |
| KNFDGABE_12 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_13 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_14 | 1.0 | 0.0 | 1.0 |
| KNFDGABE_15 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_20 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_21 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_22 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_25 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_27 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_29 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_31 | 0.0 | 1.0 | 0.0 |
| KNFDGABE_34 | 1.0 | 0.0 | 1.0 |
| KNFDGABE_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KNFDGABE_8 | 2773 | 32636 | False | Siphoviridae | VOG4705, VOG4334, VOG6379, VOG4641, VOG1927, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG7533, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG3307, VOG1013, VOG3307, VOG7265, VOG4693, VOG7264, VOG4548, VOG7263, VOG0322 |
| KNFDGABE_12 | 134298 | 162304 | False | Siphoviridae | VOG0198, VOG9888, VOG0686, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG7145, VOG0648, VOG0641 |
| KNFDGABE_22 | 172136 | 207576 | False | Myoviridae | VOG6298, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG7533, VOG10527, VOG4564, VOG0720, VOG4544, VOG0796, VOG4972, VOG0198, VOG4693, VOG1298, VOG9671, VOG4010, VOG4552, VOG10390, VOG4799, VOG0186, VOG1309, VOG11003, VOG9667, VOG5878, VOG4552, VOG9667 |
| KNFDGABE_27 | 96449 | 128557 | False | Siphoviridae | VOG0010, VOG9667, VOG0875, VOG9706, VOG5878, VOG0275, VOG0195, VOG4010, VOG5280, VOG5317, VOG0686, VOG7111, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG10593, VOG9782, VOG1637 |
| KNFDGABE_34 | 20302 | 37685 | False | Unknown | VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG10609, VOG0565, VOG0648, VOG0753, VOG0054 |
| KNFDGABE_34 | 111348 | 115792 | False | Unknown | VOG7627, VOG4570, VOG0322 |
Phigaro v2.4.0 (Database: Jan. 2024 release)