Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
JMMDLCDO_24111397112101WalR6.57e-115transcriptional regulatory protein84.25100.00EPH95667
JMMDLCDO_463215432348CspR4.83e-30cold shock protein84.6198.48AAO82613
JMMDLCDO_463215432351CspA7.41e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
JMMDLCDO_2862787213rep28936 / 936100.00CP005948
JMMDLCDO_301148312522rep381042 / 110488.58CP002655

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
JMMDLCDO_10.01.00.0
JMMDLCDO_20.01.00.0
JMMDLCDO_30.01.00.0
JMMDLCDO_40.01.00.0
JMMDLCDO_50.01.00.0
JMMDLCDO_60.01.00.0
JMMDLCDO_70.01.00.0
JMMDLCDO_80.01.00.0
JMMDLCDO_90.01.00.0
JMMDLCDO_100.01.00.0
JMMDLCDO_110.01.00.0
JMMDLCDO_120.01.00.0
JMMDLCDO_130.01.00.0
JMMDLCDO_140.01.00.0
JMMDLCDO_150.01.00.0
JMMDLCDO_160.01.00.0
JMMDLCDO_170.01.00.0
JMMDLCDO_180.01.00.0
JMMDLCDO_190.01.00.0
JMMDLCDO_200.01.00.0
JMMDLCDO_210.01.00.0
JMMDLCDO_221.00.01.0
JMMDLCDO_230.01.00.0
JMMDLCDO_240.01.00.0
JMMDLCDO_250.01.00.0
JMMDLCDO_260.01.00.0
JMMDLCDO_270.01.00.0
JMMDLCDO_281.00.01.0
JMMDLCDO_291.00.01.0
JMMDLCDO_301.00.01.0
JMMDLCDO_311.00.01.0
JMMDLCDO_321.00.01.0
JMMDLCDO_331.00.01.0
JMMDLCDO_340.01.00.0
JMMDLCDO_351.00.01.0
JMMDLCDO_381.00.01.0
JMMDLCDO_391.00.01.0
JMMDLCDO_401.00.01.0
JMMDLCDO_411.00.01.0
JMMDLCDO_421.00.01.0
JMMDLCDO_431.00.01.0
JMMDLCDO_440.01.00.0
JMMDLCDO_450.01.00.0
JMMDLCDO_460.01.00.0
JMMDLCDO_470.01.00.0
JMMDLCDO_480.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
JMMDLCDO_31742444404FalseSiphoviridaeVOG0044, VOG3643, VOG0198, VOG4841, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG8294
JMMDLCDO_9150439179831FalseSiphoviridaeVOG1637, VOG8294, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0638, VOG0143, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566
JMMDLCDO_232359156965FalseSiphoviridaeVOG4602, VOG8520, VOG1563, VOG4552, VOG8222, VOG8925, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG4609, VOG0327, VOG0195, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements