Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GHAGBILO_20 | 11512 | 12554 | rep38 | 1057 / 1104 | 81.74 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHAGBILO_1 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_2 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_3 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_4 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_5 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_6 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_7 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_8 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_9 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_10 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_11 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_12 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_13 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_14 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_15 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_16 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_17 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_18 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_19 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_20 | 1.0 | 0.0 | 1.0 |
| GHAGBILO_21 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_22 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_23 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_24 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_25 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_26 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_27 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_28 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_29 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_30 | 1.0 | 0.0 | 1.0 |
| GHAGBILO_31 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_32 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_33 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_34 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_35 | 1.0 | 0.0 | 1.0 |
| GHAGBILO_36 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_37 | 1.0 | 0.0 | 1.0 |
| GHAGBILO_38 | 1.0 | 0.0 | 1.0 |
| GHAGBILO_39 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_40 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_43 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_44 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_45 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_46 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_47 | 0.0 | 1.0 | 0.0 |
| GHAGBILO_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHAGBILO_23 | 87918 | 120578 | False | Siphoviridae | VOG4910, VOG0703, VOG0861, VOG4705, VOG9945, VOG6540, VOG5924, VOG0648, VOG9888, VOG4849, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG4564, VOG0720, VOG4544, VOG0796, VOG0765, VOG0198, VOG6005, VOG0327, VOG4966, VOG4609, VOG4632, VOG6545, VOG0322, VOG9747, VOG6450, VOG4548, VOG0321, VOG2228 |
Phigaro v2.4.0 (Database: Jan. 2024 release)