Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMKDLONG_17 | 15394 | 17319 | tet(M) | ARO:3000186 | tet(M) | 98.13 | 100.31 | AB039845.1 |
| HMKDLONG_17 | 13808 | 15184 | tet(L) | ARO:3000179 | tet(L) | 99.13 | 100.00 | M11036.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HMKDLONG_17 | 13808 | 15184 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.78 | 100.00 | M29725 |
| HMKDLONG_17 | 15394 | 17319 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.12 | 100.00 | X75073 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMKDLONG_17 | 13811 | 15184 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.34 | 100.00 | WP_001574277.1 |
| HMKDLONG_17 | 15397 | 17319 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.91 | 100.00 | WP_000691736.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMKDLONG_9 | 28188 | 27481 | WalR | 2.18e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HMKDLONG_2 | 97035 | 96838 | CspR | 3.87e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HMKDLONG_2 | 97035 | 96841 | CspA | 1.89e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMKDLONG_1 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_2 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_3 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_4 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_5 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_6 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_7 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_8 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_9 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_10 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_11 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_12 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_13 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_14 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_15 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_16 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_17 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_18 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_19 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_20 | 0.0 | 1.0 | 0.0 |
| HMKDLONG_22 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_23 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_25 | 1.0 | 0.0 | 1.0 |
| HMKDLONG_27 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMKDLONG_3 | 57157 | 60017 | False | Unknown | VOG3349, VOG2788, VOG3622, VOG0267, VOG0267, VOG0267, VOG3349, VOG8288, VOG0267 |
| HMKDLONG_11 | 4791 | 37744 | False | Siphoviridae | VOG4334, VOG4763, VOG10868, VOG4856, VOG3462, VOG0801, VOG5793, VOG0866, VOG9312, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681, VOG0198, VOG2246, VOG5795, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG6357, VOG9747 |
Phigaro v2.4.0 (Database: Jan. 2024 release)