Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HFEONIEA_3423313035WalR1.42e-114transcriptional regulatory protein84.25100.00EPH95667
HFEONIEA_374717665CspR4.24e-30cold shock protein84.6198.48AAO82613
HFEONIEA_374717668CspA6.50e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HFEONIEA_18139767rep38630 / 90387.94CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HFEONIEA_10.01.00.0
HFEONIEA_20.01.00.0
HFEONIEA_30.01.00.0
HFEONIEA_40.01.00.0
HFEONIEA_50.01.00.0
HFEONIEA_60.01.00.0
HFEONIEA_70.01.00.0
HFEONIEA_80.01.00.0
HFEONIEA_90.01.00.0
HFEONIEA_100.01.00.0
HFEONIEA_110.01.00.0
HFEONIEA_120.01.00.0
HFEONIEA_130.01.00.0
HFEONIEA_140.01.00.0
HFEONIEA_150.01.00.0
HFEONIEA_161.00.01.0
HFEONIEA_170.01.00.0
HFEONIEA_181.00.01.0
HFEONIEA_190.01.00.0
HFEONIEA_201.00.01.0
HFEONIEA_211.00.01.0
HFEONIEA_221.00.01.0
HFEONIEA_230.01.00.0
HFEONIEA_241.00.01.0
HFEONIEA_251.00.01.0
HFEONIEA_261.00.01.0
HFEONIEA_271.00.01.0
HFEONIEA_281.00.01.0
HFEONIEA_291.00.01.0
HFEONIEA_301.00.01.0
HFEONIEA_311.00.01.0
HFEONIEA_321.00.01.0
HFEONIEA_331.00.01.0
HFEONIEA_340.01.00.0
HFEONIEA_351.00.01.0
HFEONIEA_361.00.01.0
HFEONIEA_371.00.01.0
HFEONIEA_381.00.01.0
HFEONIEA_391.00.01.0
HFEONIEA_401.00.01.0
HFEONIEA_411.00.01.0
HFEONIEA_421.00.01.0
HFEONIEA_431.00.01.0
HFEONIEA_441.00.01.0
HFEONIEA_450.01.00.0
HFEONIEA_461.00.01.0
HFEONIEA_560.01.00.0
HFEONIEA_670.01.00.0
HFEONIEA_780.01.00.0
HFEONIEA_810.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HFEONIEA_1152658174567FalseSiphoviridaeVOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG4605, VOG4599, VOG10957, VOG8870

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements