Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHBCAKBN_1 | 130533 | 132458 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NHBCAKBN_11 | 95743 | 96948 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| NHBCAKBN_6 | 137 | 1102 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHBCAKBN_6 | 137 | 1102 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| NHBCAKBN_1 | 130533 | 132458 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHBCAKBN_6 | 137 | 1099 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| NHBCAKBN_11 | 96973 | 97482 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| NHBCAKBN_1 | 130536 | 132458 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NHBCAKBN_11 | 95743 | 96945 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHBCAKBN_31 | 12310 | 10730 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHBCAKBN_1 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_2 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_3 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_4 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_5 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_6 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_7 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_8 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_9 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_10 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_11 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_12 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_13 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_14 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_15 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_16 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_17 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_18 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_19 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_20 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_21 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_22 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_23 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_24 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_25 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_26 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_27 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_28 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_29 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_30 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_31 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_32 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_33 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_34 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_35 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_36 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_37 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_38 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_39 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_40 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_41 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_42 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_43 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_44 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_45 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_46 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_47 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_48 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_49 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_50 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_51 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_52 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_53 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_54 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_55 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_56 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_57 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_58 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_59 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_60 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_61 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_62 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_63 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_64 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_65 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_66 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_67 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_68 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_69 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_70 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_71 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_72 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_73 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_74 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_75 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_76 | 1.0 | 0.0 | 1.0 |
| NHBCAKBN_77 | 0.0 | 1.0 | 0.0 |
| NHBCAKBN_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NHBCAKBN_28 | 24826 | 26047 | False | Siphoviridae | VOG8241, |
Phigaro v2.4.0 (Database: Jan. 2024 release)