Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFBKFPGK_1 | 658529 | 660503 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| AFBKFPGK_6 | 72689 | 73894 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| AFBKFPGK_17 | 4069 | 4869 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| AFBKFPGK_14 | 138 | 1103 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AFBKFPGK_14 | 138 | 1103 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| AFBKFPGK_1 | 658577 | 660502 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| AFBKFPGK_17 | 4069 | 4869 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFBKFPGK_14 | 138 | 1100 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| AFBKFPGK_6 | 73919 | 74428 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| AFBKFPGK_1 | 658577 | 660499 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| AFBKFPGK_6 | 72689 | 73891 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| AFBKFPGK_17 | 4072 | 4869 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AFBKFPGK_28 | 142371 | 143951 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFBKFPGK_1 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_2 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_3 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_4 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_5 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_6 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_7 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_8 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_9 | 1.0 | 0.0 | 1.0 |
| AFBKFPGK_10 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_11 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_12 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_13 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_14 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_15 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_16 | 1.0 | 0.0 | 1.0 |
| AFBKFPGK_17 | 1.0 | 0.0 | 1.0 |
| AFBKFPGK_18 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_19 | 1.0 | 0.0 | 1.0 |
| AFBKFPGK_20 | 1.0 | 0.0 | 1.0 |
| AFBKFPGK_21 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_22 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_23 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_24 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_25 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_26 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_27 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_28 | 0.0 | 1.0 | 0.0 |
| AFBKFPGK_29 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFBKFPGK_1 | 933270 | 946411 | False | Siphoviridae | VOG6280, |
| AFBKFPGK_12 | 409479 | 439160 | False | Siphoviridae | VOG4599, |
| AFBKFPGK_12 | 509532 | 513752 | False | Myoviridae | VOG4552, |
| AFBKFPGK_24 | 155290 | 166341 | False | Siphoviridae | VOG8715, |
| AFBKFPGK_26 | 30090 | 36339 | True | Siphoviridae | VOG0275, |
| AFBKFPGK_26 | 178560 | 188754 | False | Myoviridae | VOG5684, |
Phigaro v2.4.0 (Database: Jan. 2024 release)