Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLGCADFP_25 | 49186 | 51111 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HLGCADFP_25 | 49186 | 51111 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| HLGCADFP_51 | 12709 | 13272 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.47 | 70.41 | M14730 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLGCADFP_25 | 49189 | 51111 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| HLGCADFP_51 | 12709 | 13272 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 98.94 | 70.68 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLGCADFP_1 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_2 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_3 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_4 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_5 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_6 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_7 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_8 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_9 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_10 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_11 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_12 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_13 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_14 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_15 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_16 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_17 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_18 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_19 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_20 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_21 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_22 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_23 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_24 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_25 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_26 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_27 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_28 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_29 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_30 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_31 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_32 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_33 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_34 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_35 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_36 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_37 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_38 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_39 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_40 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_41 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_42 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_43 | 1.0 | 0.0 | 1.0 |
| HLGCADFP_44 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_45 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_46 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_47 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_48 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_49 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_50 | 1.0 | 0.0 | 1.0 |
| HLGCADFP_51 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_52 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_53 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_54 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_55 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_56 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_57 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_58 | 1.0 | 0.0 | 1.0 |
| HLGCADFP_59 | 1.0 | 0.0 | 1.0 |
| HLGCADFP_63 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_64 | 0.0 | 1.0 | 0.0 |
| HLGCADFP_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLGCADFP_1 | 325808 | 331482 | False | Myoviridae | VOG2142, |
| HLGCADFP_1 | 339228 | 348345 | False | Siphoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)