Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLKFGAHH_45 | 167917 | 169122 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GLKFGAHH_34 | 150885 | 152810 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GLKFGAHH_34 | 150885 | 152810 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLKFGAHH_45 | 169147 | 169656 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GLKFGAHH_34 | 150885 | 152807 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GLKFGAHH_45 | 167917 | 169119 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLKFGAHH_1 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_2 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_3 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_4 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_5 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_6 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_7 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_8 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_9 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_10 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_11 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_12 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_13 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_14 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_15 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_16 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_17 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_18 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_19 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_20 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_21 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_22 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_23 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_24 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_25 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_26 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_27 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_28 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_29 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_30 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_31 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_32 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_33 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_34 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_35 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_36 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_37 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_38 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_39 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_40 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_41 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_43 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_44 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_45 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_46 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_47 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_48 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_50 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_51 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_52 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_53 | 1.0 | 0.0 | 1.0 |
| GLKFGAHH_56 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_57 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_58 | 0.0 | 1.0 | 0.0 |
| GLKFGAHH_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLKFGAHH_1 | 520541 | 532233 | False | Myoviridae | VOG9315, |
Phigaro v2.4.0 (Database: Jan. 2024 release)