Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 3 | 4.69 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BLMOCFEO_1 | 550308 | 551357 | clbA | ARO:3002814 | clbA | 92.26 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BLMOCFEO_1 | 550308 | 551357 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.14 | 100.00 | KR610408 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BLMOCFEO_1 | 550308 | 551354 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.26 | 100.00 | WP_012116915.1 |
| BLMOCFEO_1 | 547320 | 547838 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 84.97 | 100.00 | WP_003242546.1 |
| BLMOCFEO_1 | 1752672 | 1755269 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.29 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BLMOCFEO_1 | 3463507 | 3464688 | capB | 0.0 | Capsule | Immune modulation | 82.04 | 99.66 | NP_391471 |
| BLMOCFEO_1 | 3463043 | 3463492 | capC | 1.46e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BLMOCFEO_1 | 133405 | 134541 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| BLMOCFEO_1 | 18627 | 19496 | pdxS | 5.98e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| BLMOCFEO_1 | 1545401 | 1546177 | CodY | 3.25e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BLMOCFEO_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BLMOCFEO_1 | 1195907 | 1222687 | False | Myoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG4612, VOG3390, VOG4705 |
| BLMOCFEO_1 | 2019378 | 2048421 | False | Siphoviridae | VOG8483, VOG3532, VOG10547, VOG10230, VOG0641, VOG7896, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4568, VOG4556, VOG1886, VOG4581, VOG2703 |
| BLMOCFEO_1 | 2054056 | 2059171 | False | Unknown | VOG0186, VOG8233, VOG1878, VOG4552, VOG0650, VOG9667 |
| BLMOCFEO_1 | 2078542 | 2107356 | False | Siphoviridae | VOG11003, VOG6116, VOG8440, VOG4707, VOG0136, VOG4705, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581 |
| BLMOCFEO_1 | 2120941 | 2126599 | False | Myoviridae | VOG4724, VOG4966, VOG7462, VOG0026, VOG0052 |
| BLMOCFEO_1 | 2838339 | 2871358 | False | Siphoviridae | VOG5216, VOG5353, VOG6116, VOG0602, VOG4824, VOG5221, VOG4705, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG4545, VOG11074, VOG0724, VOG5361, VOG3676, VOG4555, VOG0692, VOG2613, VOG3699, VOG5023, VOG0275, VOG0274, VOG2215, VOG0101, VOG0048, VOG7910, VOG4791, VOG2167 |
| BLMOCFEO_1 | 2888963 | 2893026 | False | Unknown | VOG0026, VOG2920 |
| BLMOCFEO_1 | 2969228 | 2998042 | False | Siphoviridae | VOG11003, VOG6116, VOG8440, VOG4707, VOG0136, VOG4705, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581 |
| BLMOCFEO_1 | 3011627 | 3017285 | False | Myoviridae | VOG4724, VOG4966, VOG7462, VOG0026, VOG0052 |
Phigaro v2.4.0 (Database: Jan. 2024 release)