Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDDPOOHJ_56 | 91412 | 92116 | WalR | 2.44e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MDDPOOHJ_17 | 229 | 426 | CspR | 3.34e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MDDPOOHJ_6 | 6086 | 7144 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDDPOOHJ_1 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_2 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_3 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_4 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_5 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_6 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_7 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_8 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_9 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_12 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_13 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_15 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_16 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_17 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_18 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_19 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_20 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_21 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_22 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_23 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_24 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_25 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_26 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_29 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_30 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_31 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_32 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_33 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_34 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_35 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_36 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_37 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_43 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_44 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_45 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_46 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_47 | 1.0 | 0.0 | 1.0 |
| MDDPOOHJ_48 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_49 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_50 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_54 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_55 | 0.0 | 1.0 | 0.0 |
| MDDPOOHJ_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDDPOOHJ_22 | 126828 | 168107 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG7136, VOG0198, VOG3643, VOG0152, VOG0195, VOG4567, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG10867, VOG0181, VOG4552, VOG3622, VOG6495 |
| MDDPOOHJ_31 | 41085 | 51865 | False | Siphoviridae | VOG10397, VOG1581, VOG4632, VOG4606, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)