Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLGOOLJM_75 | 79715 | 79011 | WalR | 6.20e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LLGOOLJM_46 | 13907 | 14104 | CspR | 6.26e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLGOOLJM_1 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_2 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_3 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_5 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_6 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_7 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_9 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_10 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_11 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_12 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_14 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_16 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_17 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_18 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_19 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_20 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_21 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_22 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_24 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_25 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_26 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_27 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_28 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_29 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_33 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_35 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_42 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_46 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_50 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_51 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_52 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_53 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_54 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_55 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_56 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_57 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_58 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_59 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_60 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_61 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_63 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_68 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_69 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_70 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_71 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_72 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_74 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_75 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_76 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_77 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_78 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_79 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_80 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_81 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_83 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_84 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_85 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_86 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_87 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_88 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_89 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_90 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_91 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_92 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_93 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_94 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_95 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_96 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_97 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_98 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_99 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_100 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_101 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_102 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_103 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_104 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_105 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_106 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_109 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_110 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_111 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_112 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_113 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_114 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_115 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_116 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_117 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_118 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_119 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_121 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_124 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_125 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_126 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_127 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_128 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_129 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_130 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_131 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_132 | 1.0 | 0.0 | 1.0 |
| LLGOOLJM_133 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_134 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_135 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_136 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_137 | 0.0 | 1.0 | 0.0 |
| LLGOOLJM_138 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLGOOLJM_11 | 17104 | 42844 | False | Siphoviridae | VOG8303, VOG4649, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841 |
| LLGOOLJM_20 | 4919 | 15455 | False | Siphoviridae | VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG2935, VOG1886, VOG4581, VOG0195 |
| LLGOOLJM_46 | 32096 | 42108 | False | Myoviridae / Siphoviridae | VOG1383, VOG9312, VOG4602, VOG9667, VOG6495, VOG9500, VOG6179, VOG6495, VOG7236, VOG8241, VOG1309, VOG0186, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)