Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_24 | 18033 | 19082 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHOOHJJF_24 | 18033 | 19068 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| OHOOHJJF_193 | 3749 | 5125 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.00 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_24 | 18033 | 19079 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| OHOOHJJF_193 | 3755 | 5125 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_145 | 27686 | 28867 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| OHOOHJJF_145 | 27222 | 27671 | capC | 9.61e-114 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_90 | 31901 | 33037 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| OHOOHJJF_225 | 4394 | 5263 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| OHOOHJJF_35 | 24614 | 25390 | CodY | 8.63e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OHOOHJJF_185 | 7940 | 8332 | spxA1 | 9.57e-71 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| OHOOHJJF_78 | 1419 | 1616 | CspA | 7.75e-34 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| OHOOHJJF_232 | 1058 | 1252 | CspD | 3.83e-29 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| OHOOHJJF_232 | 1058 | 1255 | CspB | 7.95e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| OHOOHJJF_78 | 1419 | 1613 | CspR | 1.24e-28 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| OHOOHJJF_212 | 11885 | 11013 | lipA (SAUSA300_0829) | 7.06e-164 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHOOHJJF_1 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_2 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_3 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_4 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_5 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_6 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_7 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_8 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_9 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_10 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_11 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_12 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_13 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_14 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_15 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_16 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_17 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_18 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_19 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_20 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_21 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_22 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_23 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_24 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_25 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_26 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_27 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_28 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_29 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_31 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_32 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_33 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_34 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_35 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_36 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_37 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_38 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_39 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_40 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_41 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_42 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_43 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_44 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_45 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_46 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_47 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_48 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_49 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_50 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_51 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_52 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_53 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_54 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_55 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_56 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_57 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_58 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_59 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_60 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_61 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_62 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_63 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_64 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_65 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_66 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_67 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_68 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_69 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_70 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_71 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_72 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_73 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_74 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_75 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_76 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_77 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_78 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_79 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_80 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_81 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_82 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_83 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_84 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_85 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_86 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_87 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_88 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_89 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_90 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_91 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_92 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_93 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_94 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_95 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_96 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_97 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_98 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_99 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_100 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_101 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_102 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_103 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_105 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_106 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_107 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_108 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_109 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_110 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_111 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_112 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_113 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_114 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_115 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_116 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_117 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_118 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_119 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_124 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_134 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_145 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_155 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_164 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_173 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_180 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_181 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_182 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_183 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_184 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_185 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_186 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_187 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_188 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_189 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_190 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_191 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_192 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_193 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_194 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_195 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_196 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_197 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_198 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_199 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_200 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_201 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_202 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_203 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_204 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_205 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_206 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_207 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_208 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_209 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_210 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_211 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_212 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_213 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_214 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_215 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_216 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_217 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_218 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_219 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_220 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_221 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_222 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_223 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_224 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_225 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_226 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_227 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_228 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_229 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_230 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_231 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_232 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_233 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_234 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_235 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_236 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_237 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_238 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_239 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_240 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_241 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_242 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_243 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_244 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_245 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_246 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_247 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_248 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_249 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_250 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_251 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_252 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_253 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_254 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_255 | 1.0 | 0.0 | 1.0 |
| OHOOHJJF_256 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_257 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_258 | 0.0 | 1.0 | 0.0 |
| OHOOHJJF_259 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHOOHJJF_180 | 11805 | 17256 | False | Siphoviridae | VOG0275, VOG4602, VOG1561, VOG9667, VOG11075, VOG0650, VOG4552 |
| OHOOHJJF_180 | 28272 | 50879 | False | Siphoviridae | VOG5447, VOG3631, VOG4972, VOG3244, VOG4681, VOG0796, VOG10439, VOG0720, VOG4564, VOG4555, VOG4553, VOG1125, VOG0815, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG2621, VOG0725, VOG4545, VOG4605, VOG4599, VOG5535 |
| OHOOHJJF_194 | 5934 | 32304 | False | Myoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG4870, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705 |
| OHOOHJJF_197 | 1986 | 26554 | False | Siphoviridae | VOG0641, VOG7896, VOG3390, VOG4612, VOG4660, VOG4772, VOG0801, VOG5910, VOG0541, VOG4586, VOG0704, VOG0539, VOG1266, VOG0204, VOG5361, VOG4553, VOG4568, VOG4556, VOG3607, VOG1886, VOG4581, VOG0713, VOG4841, VOG0531, VOG0275, VOG0198, VOG6242 |
Phigaro v2.4.0 (Database: Jan. 2024 release)