Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDPOLOKK_36 | 4036 | 4530 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| HDPOLOKK_44 | 168 | 812 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDPOLOKK_36 | 4036 | 4530 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| HDPOLOKK_44 | 168 | 812 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDPOLOKK_44 | 171 | 812 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| HDPOLOKK_36 | 4036 | 4527 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDPOLOKK_15 | 35831 | 36538 | WalR | 1.76e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HDPOLOKK_4 | 29714 | 29911 | CspR | 1.62e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HDPOLOKK_4 | 29714 | 29908 | CspA | 7.92e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDPOLOKK_1 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_2 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_3 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_4 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_5 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_6 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_7 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_8 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_9 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_10 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_11 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_12 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_13 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_14 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_15 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_16 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_17 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_18 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_19 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_20 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_21 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_22 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_23 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_24 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_25 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_26 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_27 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_28 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_29 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_30 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_31 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_32 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_33 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_34 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_35 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_36 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_37 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_38 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_39 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_40 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_42 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_43 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_44 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_45 | 0.0 | 1.0 | 0.0 |
| HDPOLOKK_46 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_47 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_50 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_51 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_53 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_54 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_55 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_56 | 1.0 | 0.0 | 1.0 |
| HDPOLOKK_59 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDPOLOKK_1 | 154658 | 189143 | False | Myoviridae | VOG0703, VOG1637, VOG4705, VOG4334, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG3435, VOG4711, VOG4555, VOG9789, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG11063, VOG7265, VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322 |
| HDPOLOKK_1 | 189731 | 191356 | False | Unknown | VOG4552, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)