Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ONKPJGDI_56 | 82 | 576 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ONKPJGDI_56 | 82 | 576 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ONKPJGDI_56 | 85 | 576 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ONKPJGDI_32 | 6216 | 5509 | WalR | 6.02e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| ONKPJGDI_19 | 8185 | 7988 | CspR | 5.12e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| ONKPJGDI_19 | 8185 | 7991 | CspA | 8.84e-28 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ONKPJGDI_43 | 1463 | 2613 | rep33 | 1166 / 1155 | 80.62 | X92946 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ONKPJGDI_1 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_2 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_3 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_4 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_5 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_6 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_7 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_8 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_9 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_10 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_11 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_12 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_13 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_14 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_15 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_16 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_17 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_18 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_19 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_20 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_21 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_22 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_23 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_24 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_25 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_26 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_27 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_28 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_29 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_30 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_31 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_32 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_33 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_34 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_35 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_36 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_37 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_38 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_39 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_40 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_41 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_42 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_43 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_44 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_45 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_46 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_47 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_48 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_49 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_50 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_51 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_52 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_53 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_54 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_56 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_58 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_60 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_61 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_62 | 0.0 | 1.0 | 0.0 |
| ONKPJGDI_63 | 1.0 | 0.0 | 1.0 |
| ONKPJGDI_65 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ONKPJGDI_11 | 5779 | 31673 | False | Siphoviridae | VOG5904, VOG4633, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG9503, VOG0689, VOG0198, VOG0637, VOG0371, VOG7265, VOG4693, VOG7264, VOG4548, VOG7263 |
Phigaro v2.4.0 (Database: Jan. 2024 release)