Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MJEBJPHH_7 | 35841 | 36485 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
| MJEBJPHH_24 | 4664 | 6040 | tet(L) | ARO:3000179 | tet(L) | 99.13 | 100.00 | M11036.1 |
| MJEBJPHH_24 | 2529 | 4454 | tet(M) | ARO:3000186 | tet(M) | 98.13 | 100.31 | AB039845.1 |
| MJEBJPHH_53 | 82 | 576 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MJEBJPHH_24 | 4664 | 6040 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.78 | 100.00 | M29725 |
| MJEBJPHH_53 | 82 | 576 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| MJEBJPHH_24 | 2529 | 4454 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.12 | 100.00 | X75073 |
| MJEBJPHH_7 | 35841 | 36485 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MJEBJPHH_7 | 35844 | 36485 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| MJEBJPHH_24 | 4664 | 6037 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.34 | 100.00 | WP_001574277.1 |
| MJEBJPHH_24 | 2529 | 4451 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.91 | 100.00 | WP_000691736.1 |
| MJEBJPHH_53 | 85 | 576 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MJEBJPHH_8 | 37866 | 38573 | WalR | 2.78e-116 | transcriptional regulatory protein | 85.17 | 100.43 | EPH95667 |
| MJEBJPHH_3 | 30215 | 30412 | CspR | 1.91e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MJEBJPHH_3 | 30215 | 30409 | CspA | 3.30e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MJEBJPHH_1 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_2 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_3 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_4 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_5 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_6 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_7 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_8 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_9 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_10 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_11 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_12 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_13 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_14 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_15 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_16 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_17 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_18 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_19 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_20 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_21 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_22 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_23 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_24 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_25 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_26 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_27 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_28 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_29 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_30 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_31 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_32 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_33 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_34 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_35 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_36 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_37 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_38 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_39 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_40 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_41 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_42 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_43 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_44 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_45 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_48 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_50 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_51 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_53 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_54 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_55 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_56 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_57 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_59 | 1.0 | 0.0 | 1.0 |
| MJEBJPHH_60 | 0.0 | 1.0 | 0.0 |
| MJEBJPHH_63 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MJEBJPHH_1 | 78972 | 112902 | False | Myoviridae | VOG4552, VOG6128, VOG0321, VOG4548, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG8575, VOG5545, VOG0637, VOG5878, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG9789, VOG4555, VOG4711, VOG3435, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4334, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)