Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 21 | 33 | 39.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GBKBKGKE_10 | 4885 | 6144 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681445 |
| GBKBKGKE_38 | 60506 | 61099 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| GBKBKGKE_38 | 60506 | 61099 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| GBKBKGKE_38 | 60506 | 61099 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| GBKBKGKE_10 | 3912 | 4888 | STER_RS07095 | 0.0 | Capsule | Immune modulation | 99.59 | 99.90 | WP_011681444 |
| GBKBKGKE_10 | 2926 | 3894 | STER_RS07090 | 0.0 | Capsule | Immune modulation | 99.28 | 100.00 | WP_011681443 |
| GBKBKGKE_38 | 24979 | 25740 | srtA | 0.0 | Sortase A | Exoenzyme | 99.21 | 100.00 | - |
| GBKBKGKE_38 | 59637 | 60506 | rfbA | 0.0 | Capsule | Immune modulation | 99.08 | 100.00 | WP_011681286 |
| GBKBKGKE_41 | 33551 | 34519 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.07 | 100.00 | WP_082302295 |
| GBKBKGKE_38 | 105130 | 105920 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.99 | 100.00 | - |
| GBKBKGKE_5 | 13101 | 13832 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011227248 |
| GBKBKGKE_5 | 11640 | 13100 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 98.49 | 100.00 | WP_011681177 |
| GBKBKGKE_10 | 2209 | 2924 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 98.32 | 99.86 | WP_011681442 |
| GBKBKGKE_10 | 1093 | 1863 | STER_RS07075 | 0.0 | Capsule | Immune modulation | 98.18 | 99.23 | WP_011681440 |
| GBKBKGKE_5 | 13101 | 13832 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 97.81 | 100.00 | WP_011226048 |
| GBKBKGKE_5 | 13101 | 13832 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 97.54 | 100.00 | WP_011681176 |
| GBKBKGKE_5 | 11640 | 13100 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 97.47 | 100.21 | WP_011226049 |
| GBKBKGKE_10 | 6263 | 7114 | rfbD | 0.0 | Capsule | Immune modulation | 97.30 | 100.00 | WP_014621820 |
| GBKBKGKE_35 | 160165 | 165060 | SAG_RS09105 | 0.0 | Agglutinin receptor | Adherence | 96.89 | 100.00 | WP_000167699 |
| GBKBKGKE_5 | 14543 | 15283 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 96.76 | 100.00 | WP_011681174 |
| GBKBKGKE_5 | 11640 | 13100 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.65 | 100.21 | WP_041827043 |
| GBKBKGKE_5 | 14543 | 15283 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 96.49 | 100.00 | WP_011226046 |
| GBKBKGKE_5 | 14543 | 15278 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.20 | 98.13 | WP_011227246 |
| GBKBKGKE_5 | 13841 | 14533 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 95.81 | 100.00 | WP_011227247 |
| GBKBKGKE_5 | 13841 | 14533 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.81 | 100.00 | WP_011226047 |
| GBKBKGKE_35 | 160117 | 165060 | SSU98_0978 | 0.0 | Agglutinin receptor | Adherence | 95.81 | 99.82 | YP_001200536 |
| GBKBKGKE_35 | 160117 | 165060 | SSU05_0965 | 0.0 | Agglutinin receptor | Adherence | 95.79 | 99.82 | YP_001198331 |
| GBKBKGKE_5 | 15340 | 16707 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 95.61 | 100.00 | WP_011226045 |
| GBKBKGKE_5 | 15340 | 16705 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 94.29 | 99.85 | WP_011681173 |
| GBKBKGKE_5 | 13841 | 14533 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.75 | 100.00 | WP_011681175 |
| GBKBKGKE_35 | 125423 | 126726 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.09 | 99.54 | WP_000022832 |
| GBKBKGKE_12 | 14294 | 15304 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.92 | 99.51 | WP_002986042 |
| GBKBKGKE_43 | 4807 | 6090 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.65 | 99.77 | WP_000107753 |
| GBKBKGKE_38 | 61528 | 62574 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GBKBKGKE_35 | 160144 | 165057 | B9H01_RS04765 | 0.0 | glucan-binding protein | 96.40 | 99.70 | AUS90958 |
| GBKBKGKE_38 | 22292 | 21309 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| GBKBKGKE_20 | 88397 | 89470 | MntE | 0.0 | manganese homeostasis | 94.13 | 99.72 | ABF32167 |
| GBKBKGKE_35 | 41867 | 42835 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| GBKBKGKE_10 | 186890 | 189193 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 93.10 | 99.22 | AAK74619 |
| GBKBKGKE_39 | 67644 | 66163 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.11 | 100.00 | ABJ54480 |
| GBKBKGKE_13 | 11291 | 9045 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| GBKBKGKE_43 | 89844 | 90842 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| GBKBKGKE_11 | 4655 | 5626 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| GBKBKGKE_10 | 57025 | 55874 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| GBKBKGKE_10 | 20153 | 18165 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.99 | 100.00 | AE014259_2 |
| GBKBKGKE_38 | 38488 | 40218 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| GBKBKGKE_20 | 130339 | 131817 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| GBKBKGKE_35 | 125423 | 126724 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| GBKBKGKE_20 | 145562 | 147454 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 86.05 | 98.90 | ABP91129 |
| GBKBKGKE_13 | 6120 | 7829 | PGM | 0.0 | phosphoglucomutase | 83.89 | 99.65 | ACH87041 |
| GBKBKGKE_1 | 55454 | 54444 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| GBKBKGKE_44 | 62346 | 63707 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| GBKBKGKE_1 | 5134 | 7026 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| GBKBKGKE_35 | 110994 | 111884 | bglB | 5.13e-179 | putative phospho--glucosidase | 88.55 | 99.66 | AAK33487 |
| GBKBKGKE_13 | 8853 | 7996 | metF | 7.62e-167 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| GBKBKGKE_38 | 133561 | 134265 | covR | 5.75e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| GBKBKGKE_39 | 95251 | 95922 | rr01 | 3.10e-126 | response regulator | 84.38 | 99.56 | CAB54566 |
| GBKBKGKE_38 | 133561 | 134265 | walR | 2.72e-122 | DNA-binding response regulator | 81.70 | 100.00 | ANC99504 |
| GBKBKGKE_6 | 9863 | 9177 | CovR | 1.43e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| GBKBKGKE_13 | 2166 | 1498 | CiaR | 6.31e-119 | two-component response regulator | 83.86 | 99.55 | AAK74935 |
| GBKBKGKE_13 | 2166 | 1495 | ciaR | 6.27e-117 | two component system response regulator | 81.70 | 99.12 | AIK75708 |
| GBKBKGKE_43 | 91118 | 91513 | SpxA2 | 1.83e-75 | transcriptional regulator | 90.91 | 100.00 | ERL21461 |
| GBKBKGKE_44 | 51189 | 50788 | SpxA1 | 1.75e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| GBKBKGKE_4 | 25405 | 25118 | spr0479 | 3.33e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| GBKBKGKE_35 | 7450 | 7704 | spr1327 | 2.60e-45 | essential gene | 95.29 | 100.00 | AAL00131 |
| GBKBKGKE_20 | 179170 | 178907 | spr0175 | 9.24e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| GBKBKGKE_20 | 178367 | 178077 | spr0177 | 5.43e-37 | essential gene | 81.00 | 98.02 | AAK98981 |
| GBKBKGKE_43 | 6248 | 6748 | RopE (M5005_Spy_1611) | 4.88e-76 | probable DNA-directed RNA polymerase subunit delta | 80.84 | 87.43 | AAK34603 |
| GBKBKGKE_10 | 186890 | 189187 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 83.07 | 98.08 | MYN69560 |
| GBKBKGKE_1 | 19591 | 20610 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBKBKGKE_1 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_2 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_3 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_4 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_5 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_6 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_7 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_8 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_9 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_10 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_11 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_12 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_13 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_14 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_15 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_16 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_17 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_18 | 1.0 | 0.0 | 1.0 |
| GBKBKGKE_19 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_20 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_21 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_22 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_27 | 1.0 | 0.0 | 1.0 |
| GBKBKGKE_35 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_38 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_39 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_41 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_42 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_43 | 0.0 | 1.0 | 0.0 |
| GBKBKGKE_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBKBKGKE_7 | 17399 | 19637 | False | Unknown | VOG9667, VOG9405, VOG6396 |
Phigaro v2.4.0 (Database: Jan. 2024 release)